New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4542672	20 (0.590)	4 (0.130)	4/262	4.2	17.5%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913_3_hsa_tpiA	= 4542968	19 (0.600)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATA  >  NC_000913_3_hsa_tpiA/4542526‑4542805                                                                                                                                                   |                                                                                                                                      cGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                     <  1:510268/149‑1 (MQ=255)           tcAGTAATGCTGCTCGTTTGGCCGGATTATGGGAAAGAAATAAACTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat                                                                                                                           <  2:96313/148‑1 (MQ=255)           ccAGTAATGCTGCTCGTTTTGCCGGATTACGGGAAAGAAATAATAACATAAACTTATAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATCATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGTCCAAACTGTCCatat                                                                                                                           >  2:456107/1‑149 (MQ=255)                      gctCGTTTTGCCGGATTATGGGAAAGAAGTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt                                                                                                                >  2:50295/1‑149 (MQ=255)                                           gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTAAGTATTTTTTCTCAATCAt                                                                                           >  2:352422/1‑149 (MQ=255)                                                    aatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAtt                                                                                  <  1:68143/149‑1 (MQ=255)                                                           tAAACGAAAAATTAAAAAGAGAAGAGGGTGGATTTAACTTATTGATAATAAAGTGAAAAAAACAAATAAATACAAGACAATTGGGGGCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc                                                                           <  2:346583/149‑1 (MQ=255)                                                                      ttAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAGTTGGGGCCAAACTGTACATATCATAAATAAGTTACGTGTTTTTTCTCAAGCATAAGAATATTAAAAAAAGACAAAAATCa                                                                >  2:76325/1‑149 (MQ=255)                                                                        aacaagagaagagTATTGATTTAACCTATTGATAATAAAGTGAAAAAAACAAATAAATACAAGACAATTGGTGCCAAACTGTCCATAGCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc                                                              <  2:320813/146‑1 (MQ=255)                                                                         aaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTATCCATATCATAAATAAGATACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAACAAGCATCt                                                             >  2:539907/1‑149 (MQ=255)                                                                                aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt                                                      <  1:465192/149‑1 (MQ=255)                                                                                          aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                  <  1:517051/143‑1 (MQ=255)                                                                                          aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                  >  2:517051/1‑143 (MQ=255)                                                                                           tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAACTATTAAAAAACGCCAACAAGCATCTAACTGCTTGATATGTaaa                                           >  2:464942/1‑149 (MQ=255)                                                                                                     tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAt                                 <  1:50295/149‑1 (MQ=255)                                                                                                       ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATGAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATATAACTGTTTGATATGTAAATTATTTCTAttt                               >  1:238531/1‑148 (MQ=255)                                                                                                        taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGt                              >  1:386866/1‑149 (MQ=255)                                                                                                               gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTTTTTTTTAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTTTAaattaa                       >  2:533348/1‑149 (MQ=255)                                                                                                                                   cAAGACAATGGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACATACAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtat   <  1:238479/149‑1 (MQ=255)                                                                                                                                    aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtata  <  1:252728/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                      CGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATA  >  NC_000913_3_hsa_tpiA/4542526‑4542805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.