New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 164619	40 (1.180)	5 (0.150)	5/280	4.0	11.6%	intergenic (+85/‑111)	hrpB/mrcB	putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
	?	NC_000913_3_hsa_tpiA	= 3781052	36 (1.060)					intergenic (+35/‑163)	lldD/trmL	L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCC  >  NC_000913_3_hsa_tpiA/3780913‑3781196                                                                                                                                            |                                                                                                                                                   tgcgcGAAATTGATTAGCGAAATTGCGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAggg                                                                                                                                          <  1:3023/148‑1 (MQ=255)  gcgcGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTACAGGGGCAGGGTAAAGAGTTGCCTGCGGCACTGGCTACCATGGCGAAAGGGAATGCGGCATAGTCGTTGGCGCCCCCTCACCCTAACCCTCCGCCGCA‑GGGAGAgcgg                                                                                                                                         >  2:332156/1‑149 (MQ=255)             atgaGCGAAACTACGCAAGATTCGCTGGTGCAGGGGCTGGGTATAGAGTTGGCTGGGGCACTGGCTCCCCTAGCCCGAAGAAATTCGGCGTAGTTGTTTGCTCCCCCTCACCATAACCCTCTACCTCA‑GGGAGAGGGGACCGTTCGgcg                                                                                                                              <  2:97495/146‑1 (MQ=255)              tCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGACGGGACCGTTCGgcgc                                                                                                                             >  2:21208/1‑149 (MQ=255)               cAGCGAAATTACGCAAGATCCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTCTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCt                                                                                                                            <  1:44139/149‑1 (MQ=255)                 gCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGGGGCACTGGCTCCCATGGCGCAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCtgt                                                                                                                          >  1:339073/1‑149 (MQ=255)                                 ctCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGGATGTACTCCCTCActc                                                                                                          <  1:200681/148‑1 (MQ=255)                                    gCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAct                                                                                                           >  2:98540/1‑145 (MQ=255)                                    gCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAct                                                                                                           <  1:98540/145‑1 (MQ=255)                                       ggTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAc                                                                                                    <  1:124422/149‑1 (MQ=255)                                         tGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGCCCGTTCCGCGCTGTATGTACTCCCTCACTCTGAAAC‑Ga                                                                                                 <  1:446736/149‑1 (MQ=255)                                                  tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑g                                                                                                                                                  >  1:224166/1‑92 (MQ=255)                                                  tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑g                                                                                                                                                  <  2:224166/92‑1 (MQ=255)                                                  tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCAcc                                                                                        >  2:341088/1‑148 (MQ=255)                                                      tAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCttt                                                                                    >  1:40973/1‑149 (MQ=255)                                                                 cTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTc                                                                         >  1:424374/1‑149 (MQ=255)                                                                      gCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCtgtatgta                                                                                                                     >  1:170714/1‑101 (MQ=255)                                                                      gCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCtgtatgta                                                                                                                     <  2:170714/101‑1 (MQ=255)                                                                        aCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGgc                                                                                                                               <  1:413420/89‑1 (MQ=255)                                                                        aCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGgc                                                                                                                               >  2:413420/1‑89 (MQ=255)                                                                            gCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCCCCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCggg                                                              <  2:367109/149‑1 (MQ=255)                                                                                 cATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGagag                                                         <  1:371492/149‑1 (MQ=255)                                                                                      cGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCg                                                    >  1:370245/1‑149 (MQ=255)                                                                                       gAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCCCTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGACACGGCCgt                                                   >  2:540171/1‑148 (MQ=255)                                                                                             gAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAg                                             <  1:288335/149‑1 (MQ=255)                                                                                              aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGGGGGCCGGGGTGAgg                                            >  1:94407/1‑149 (MQ=255)                                                                                                                           cccTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTc               >  1:150634/1‑149 (MQ=255)                                                                                                                            ccTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa                                      >  2:384464/1‑125 (MQ=255)                                                                                                                            ccTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa                                      <  1:384464/125‑1 (MQ=255)                                                                                                                            ccTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt              >  2:458171/1‑149 (MQ=255)                                                                                                                             cTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg             >  1:337985/1‑149 (MQ=255)                                                                                                                               tccccTCTCCCTGA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCgg                                                               >  2:276543/3‑97 (MQ=255)                                                                                                                               tccccTCTCCCTGA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCgg                                                               <  1:276543/95‑1 (MQ=255)                                                                                                                                  ccTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCCCACCCATTTTCTGCTATc        >  2:19974/1‑149 (MQ=255)                                                                                                                                   ccctcCCCCAGGGGAGAGGGCACCGTCCGTCGGTGTATGCTCTCCCTCTC‑CCGAAACACTCACCGCCCTGTTGTTTCCCCCCCCCCCCCACGGGGGAGGGGTCCGGGGAGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATc        <  2:292505/147‑1 (MQ=255)                                                                                                                                        ccTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc  >  1:41190/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                   GGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCA‑GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCC  >  NC_000913_3_hsa_tpiA/3780913‑3781196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.