New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 4094350153 (3.140)3 (0.090) 3/198 5.7 2.6% noncoding (35/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
?NC_000913_3_hsa_tpiA 4094719 = 121 (3.510)intergenic (‑447/+4) rhaD/rhaA rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 153 total aligned reads displayed.

TTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGAC  >  NC_000913_3_hsa_tpiA/4094204‑4094497
                                                                                                                                                  |                                                                                                                                                   
tttCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGcaat                                                                                                                                                   <  1:159643/149‑1 (MQ=255)
tttCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGcaat                                                                                                                                                   >  2:787776/1‑149 (MQ=255)
    aGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGcaatcaat                                                                                                                                               <  1:56042/149‑1 (MQ=255)
      ccAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGc                                                                                                                                             >  2:288678/1‑149 (MQ=255)
        aGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCt                                                                                                                                           <  1:328205/149‑1 (MQ=255)
          gCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTGGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGa                                                                                                                                         <  1:679208/149‑1 (MQ=255)
           cGTCGGTGGTGGCTTTGGCCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGAt                                                                                                                                        <  1:439378/149‑1 (MQ=255)
                gtggtgGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTTTTGTGAATGCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGAc                                                                                                                                   >  1:810910/1‑149 (MQ=255)
                    tggCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTg                                                                                                                               >  1:666574/1‑149 (MQ=255)
                     ggCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGCTGCGACGCTGt                                                                                                                              >  1:361568/1‑149 (MQ=255)
                      gCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCGGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGc                                                                                                                                      <  2:732167/140‑1 (MQ=255)
                       cTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcg                                                                                                                            >  2:219224/1‑149 (MQ=255)
                        tttGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc                                                                                                                           >  1:577782/1‑149 (MQ=255)
                        tttGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc                                                                                                                           >  2:68145/1‑149 (MQ=255)
                        tttGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc                                                                                                                           <  2:722288/149‑1 (MQ=255)
                        tttGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc                                                                                                                           >  1:5419/1‑149 (MQ=255)
                          agATAATTCCCTGGACAAACCAGGACTGAGTAATGTTTCTCATTTTCTGTGTTCCTGTAAATTCGGGGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGt                                                                                                                         <  2:632315/148‑1 (MQ=37)
                             tCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCCTCCCGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt                                                                                                                      <  2:406588/149‑1 (MQ=255)
                             tCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt                                                                                                                      <  1:695968/149‑1 (MQ=255)
                               aTTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTGGCGCCGCAACCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTGAt                                                                                                                    >  1:610971/1‑149 (MQ=255)
                                  ccccGGACAAACCAGGACCTAGTAAGGTTTTGCATGTTCTGTGTTCCTGGAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg                                                                                                                 <  2:46995/149‑1 (MQ=37)
                                  cccTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg                                                                                                                 <  1:629705/149‑1 (MQ=255)
                                    cTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc                                                                                                               >  2:807111/1‑149 (MQ=255)
                                    cTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATGCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc                                                                                                               <  1:268590/149‑1 (MQ=255)
                                          aaaCCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCCATCGATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACaa                                                                                                         >  1:239471/1‑149 (MQ=255)
                                          aaaCCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTCTCGCGTCTTATCAGGcatccca                                                                                                         >  1:828649/1‑143 (MQ=255)
                                              cAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTAt                                                                                                     >  1:356728/1‑149 (MQ=255)
                                               aGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTAtt                                                                                                    >  1:539698/1‑149 (MQ=255)
                                                gggcTGAGTAATGTTTTGCATTGTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTg                                                                                                   <  2:417946/146‑1 (MQ=255)
                                                        tAATGTTTTGCATCTTCTGTGTTCCTGTAAATTCGGTGTGGTCGGATGCACGACCCGTTGGCCGGATAGGGCGCTCGCGCCGCATCCGACAATCAATGCCTGATGCGGCGCTGTCGCCTGTTATCAGGCCTACAACTGTTGccatactg                                                                                           >  1:710218/1‑143 (MQ=21)
                                                         aaTGTTTTGCATGTTCTGTGTTCCTGTAAATGCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGt                                                                                          <  1:181576/149‑1 (MQ=255)
                                                             ttttGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGc                                                                                      >  2:342666/1‑149 (MQ=255)
                                                               ttGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGACGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCt                                                                                    <  1:288678/149‑1 (MQ=255)
                                                               gtGCATGTTCCGTGTTCCTGTAAATTCGGTGTTGGCGGATGCACGACCCGTATGCCGGATAAGGCGCTCGCGCCGCAGCCGGCAATCAATGCCTGATGCGGCGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCt                                                                                    <  1:186889/148‑1 (MQ=21)
                                                                   aTGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATa                                                                                >  1:93668/1‑149 (MQ=255)
                                                                   aTGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATa                                                                                >  2:186301/1‑149 (MQ=255)
                                                                     gTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAg                                                                              >  1:90739/1‑149 (MQ=255)
                                                                      ttCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAgg                                                                             <  1:46562/149‑1 (MQ=255)
                                                                      ttCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAgg                                                                             >  1:261768/1‑149 (MQ=255)
                                                                       tcttgcttCATGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCATGGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGc                                                                            <  2:608944/143‑1 (MQ=18)
                                                                        cTGTGTTCCTGTTAATTCGGTGTCGTCGGATGGACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGCCCTGTAGGCCTGATAAGGCa                                                                           <  2:643390/149‑1 (MQ=255)
                                                                             ttCCTGTAGATTCGGTGTTATCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATACATGATGCGACGCTGACACGTCTTATGAGGCCTACAACTATTGCAGAGCACTAGACCTGATAAGGGACtttt                                                                      >  2:729849/1‑147 (MQ=21)
                                                                             ttCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACCACTATTGCCGCCCTGTAGGCCTGCTACGGCCCttct                                                                      >  2:247655/1‑147 (MQ=18)
                                                                             ttCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCCCTtgt                                                                      >  2:261262/1‑149 (MQ=255)
                                                                             ttCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTtgt                                                                      >  2:56697/1‑149 (MQ=255)
                                                                             ttCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTtgt                                                                      <  1:683029/149‑1 (MQ=255)
                                                                                cTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATa                                                                                <  1:394342/136‑1 (MQ=255)
                                                                                 tGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCg                                                                  >  1:811867/1‑149 (MQ=255)
                                                                                 tGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCg                                                                  >  1:223841/1‑149 (MQ=255)
                                                                                 tGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCg                                                                  >  1:667010/1‑149 (MQ=255)
                                                                                   tAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCa                                                                >  1:378156/1‑149 (MQ=255)
                                                                                       ttCGGTGTTGTCGGATGGACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTACAACTATGGCCGACCCGTAGGACTGATAAGGGACTTGTGGCGCATCCg                                                            >  2:847706/1‑149 (MQ=17)
                                                                                        tCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCgg                                                           <  1:56697/149‑1 (MQ=255)
                                                                                         cGGTGTTGTCGGATGCACGGCCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGc                                                          <  2:38297/149‑1 (MQ=255)
                                                                                              ttgtCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATACGGCAATCAATGCCTTATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGcaatca                                                     >  1:424279/1‑149 (MQ=255)
                                                                                                 tCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGcaatcaat                                                                                                                                               <  2:436227/56‑1 (MQ=255)
                                                                                                   ggATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTCGGCCTGATAAGGCACTTGTGCCGCATCAGGCAATCAATGcc                                                >  1:389905/1‑149 (MQ=255)
                                                                                                   ggATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGcc                                                >  1:741184/1‑149 (MQ=255)
                                                                                                    gATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCt                                               <  1:659159/149‑1 (MQ=255)
                                                                                                    gATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCt                                               >  2:452656/1‑149 (MQ=255)
                                                                                                         aCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGCTGCGACGCTGTCGCGTCTTACCAGGCCTACAACTATTGCCCACCCGTAGGCCTGATAACGCACTTGTCCCGCACCCTGCAATCAATGCCTCAtcc                                          >  2:475287/1‑147 (MQ=14)
                                                                                                         aCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATAAAAGCCTGATGCGGAGCATGCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCCGCAATCAATGCCTGATGc                                          >  1:850509/1‑149 (MQ=14)
                                                                                                           gACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGa                                        <  2:5419/149‑1 (MQ=255)
                                                                                                             cccGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATCCCTGATGCGACg                                      >  2:540120/1‑149 (MQ=255)
                                                                                                              ccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAg                                                                                        <  1:735466/98‑1 (MQ=255)
                                                                                                              ccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAg                                                                                        >  2:735466/1‑98 (MQ=255)
                                                                                                              ccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGc                                     >  2:505202/1‑149 (MQ=255)
                                                                                                              ccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGc                                     >  1:556442/1‑149 (MQ=255)
                                                                                                              ccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCCGATGCGACGc                                     >  1:486646/1‑149 (MQ=255)
                                                                                                              ccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCGACAACTATTGCCGACCTCTCAATCTCGTATGGCACTTGTGCCGGATTCGGCAATCAATTCCTGGTGcgccgc                                     >  1:632233/1‑149 (MQ=14)
                                                                                                                 tAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGt                                  <  1:556476/149‑1 (MQ=255)
                                                                                                                  aGGCCGGATAAGGCGCTCGCGCCTGATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTc                                 <  1:298013/149‑1 (MQ=255)
                                                                                                                  aGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTc                                 <  2:610042/149‑1 (MQ=40)
                                                                                                                    gCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTAATCAGGCCTACAACTATTGCCGACCCGAAATGATTTGTACGTACTTGTGCCGCATCCGGCCATCAATGCCTGATGCGACGCTGTggc                               >  1:598508/1‑149 (MQ=14)
                                                                                                                    gCCGGATAAGGCGCTCGCCCCGCATCCGGCAATCAATGCCTGAGGCGACGCTGTCGCGTCTTATCAGGCCTACAACGATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGAAATCAATGCCTGATGCGACGCTGTcgc                               <  1:274594/149‑1 (MQ=255)
                                                                                                                      cGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGcaa                                                        <  1:133351/122‑1 (MQ=255)
                                                                                                                      cGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGcaa                                                        >  2:133351/1‑122 (MQ=255)
                                                                                                                      cGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGt                             <  1:209663/149‑1 (MQ=39)
                                                                                                                      cGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCGGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGt                             <  2:649541/149‑1 (MQ=255)
                                                                                                                             ggCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt                                                                                                                      >  2:210853/1‑53 (MQ=255)
                                                                                                                             ggCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt                                                                                                                      <  1:210853/53‑1 (MQ=255)
                                                                                                                             ggCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGc                                                                    >  1:524020/1‑103 (MQ=255)
                                                                                                                             ggCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCa                      <  1:219224/149‑1 (MQ=40)
                                                                                                                              gcgcgcCCGCCGCAGCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACGATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg                     <  2:285285/149‑1 (MQ=255)
                                                                                                                              gcgcTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg                     >  1:154970/1‑149 (MQ=39)
                                                                                                                              gcgcTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAACCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg                     >  1:820882/1‑149 (MQ=38)
                                                                                                                               cgcTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAgg                    <  1:619465/149‑1 (MQ=38)
                                                                                                                                  tCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATc                                                              <  2:856363/104‑1 (MQ=38)
                                                                                                                                  tCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATc                                                              >  1:856363/1‑104 (MQ=38)
                                                                                                                                    gcgcCGCATCCGGCGATCAATGCCAGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCNTATCAGGCCTAc               >  1:747044/1‑149 (MQ=19)
                                                                                                                                    gcgcCGCAGCCGGCAATCAATGCCTGATGGGACGCTGTCGCGTCTTATCAGGCCTACAACGATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTAc               <  2:361568/149‑1 (MQ=16)
                                                                                                                                         gcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTc                            >  1:619446/1‑131 (MQ=33)
                                                                                                                                          cATCAGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGt         <  1:112046/149‑1 (MQ=17)
                                                                                                                                           aTCCGGCAATCAATGCCTGATGCGTCGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGtt        <  1:501595/149‑1 (MQ=17)
                                                                                                                                           aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGCTGCGACGCTGTCGCGTCTTATCAGGCCTACAACTCtt        >  2:780929/1‑149 (MQ=17)
                                                                                                                                           aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGtt        <  1:505202/149‑1 (MQ=32)
                                                                                                                                             gcGGCAATCAATGCCTGAGGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTCCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc      <  2:124266/148‑1 (MQ=17)
                                                                                                                                             ccGGCAATCAATGCCTGAAGCGACGCTGTCGCGTCTTATTAGGCCTAGAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGACTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc      <  1:658055/149‑1 (MQ=255)
                                                                                                                                               ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCCGGCCTACAACTGTTGCCg    >  2:331021/1‑149 (MQ=17)
                                                                                                                                               ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAAGCCTACACCCATTGcca    >  2:517903/1‑148 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
TTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGAC  >  NC_000913_3_hsa_tpiA/4094204‑4094497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.