New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	4555343 =	41 (0.840)	3 (0.070)	3/260	7.0	7.9%	intergenic (+12/+129)	uxuR/yjiC	fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
	?	NC_000913_3_hsa_tpiA	4555372 =	32 (0.710)					intergenic (+41/+100)	uxuR/yjiC	fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAA  >  NC_000913_3_hsa_tpiA/4555226‑4555513                                                                                                                                                   |                                                                                                                                               tCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCt                                                                                                                                              <  2:422746/149‑1 (MQ=255)     gAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTaaa                                                                                                                                          <  2:573001/149‑1 (MQ=255)      aaaaCGTTAAGCCATGTCGGCTGGAATTCTCGAACGTCGACCATTTTTATTCTGATTGCTAGCTTTTTGAATCATGGCCGTTGCATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAATGTTCCTTGCGCTTTCTTAAAt                                                                                                                                         <  2:437655/149‑1 (MQ=255)         aCGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaa                                                                                                                                      <  1:339505/149‑1 (MQ=255)         aCGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaa                                                                                                                                      <  1:39235/149‑1 (MQ=255)                gttaCGTCGGTTGGAATTCTTGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCg                                                                                                                               <  2:441387/146‑1 (MQ=255)                            ggAATTCTCGAACGTTGACTATAGTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTa                                                                                                                   <  2:416749/149‑1 (MQ=255)                              aaTTCTCGAACGGTCACGATATTTATTTTGATGGGTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑Ct                                                                                                                <  2:849575/149‑1 (MQ=255)                                  cgctatcGTTGGCTATAGTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCCTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGt                                                                                                            <  1:605646/143‑1 (MQ=255)                                         gTTGTCGATATTTATTTTGATGGCTATGTGTTTGATTTATGGCCGCTGGATAAAGTCCACGCCTGACTTATTATACGAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGc                                                                                                     <  1:235485/149‑1 (MQ=255)                                                      attgTGATGGCTAACTGTTTTATTTATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACATTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTa                                                                                        <  2:670473/149‑1 (MQ=255)                                                         tttaTGGCTATCTGTCTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTACTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTC‑CTTTGTAAATTGCAGGGTATTGTTCAGCt                                                                                     <  2:659294/146‑1 (MQ=255)                                                           gATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTAt                                                                                   <  2:193160/149‑1 (MQ=255)                                                             tGGCTTTTTGTTTGATTCATGGCGGTTGGAGAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGAATCATCGTTG‑ATGTTGCAGGGTATTGTTTAGCTATCt                                                                                 <  2:188220/149‑1 (MQ=255)                                                             tGGCTATCTGTTTGATTCATGGCCGCTGGGTAAAGTCGACGCCTTACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCt                                                                                 <  2:453892/149‑1 (MQ=255)                                                             tGGCTATCTGTTGGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCt                                                                                 <  1:749641/149‑1 (MQ=255)                                                                 tATCTGTTTGAGTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTGCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGtat                                                                             <  1:100039/149‑1 (MQ=255)                                                                       tttGATTCATGGCCGCTGGATAAGGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑Ct                                                                                                                >  1:627266/1‑108 (MQ=255)                                                                       tttGATTCATGGCCGCTGGATAAGGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑Ct                                                                                                                <  2:627266/108‑1 (MQ=255)                                                                          gATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAAt                                                                    >  1:485883/1‑149 (MQ=255)                                                                          gATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAAt                                                                    <  1:278817/149‑1 (MQ=255)                                                                               atcgCCGTTCGATAAAGTCGACGCCTGACTTATTATAATAACCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAg                                                               <  1:276642/146‑1 (MQ=255)                                                                                         gATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCAttct                                                     >  1:13350/1‑149 (MQ=255)                                                                                               gTCGACGCCTGACTTATTATAATGAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTgg                                               <  1:728256/149‑1 (MQ=255)                                                                                                  gACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCATTTTTTTATTAATAAGTCGAAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAg                                            >  1:602683/1‑149 (MQ=255)                                                                                                            ttattaTAATAAGCCCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCa                                  <  2:352093/149‑1 (MQ=255)                                                                                                             tattatAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTGGTTCTTTACCaa                                 >  1:73957/1‑149 (MQ=255)                                                                                                                tataATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTa                                                             <  2:175422/118‑1 (MQ=255)                                                                                                                tataATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTa                                                             >  1:175422/1‑118 (MQ=255)                                                                                                                           cAAGGGTAAACGTTGCTTGCGCTTTCTTAGATTAAGTGGTCGCTATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCa                   <  1:806843/149‑1 (MQ=255)                                                                                                                                   aaCGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCAttttt           >  1:758010/1‑149 (MQ=255)                                                                                                                                    aCGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTAACAATATAATTCGATTAACCAtttttt          >  1:170940/1‑149 (MQ=255)                                                                                                                                           ttGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCt                                                 >  1:72878/1‑103 (MQ=255)                                                                                                                                           ttGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCt                                                 <  2:72878/103‑1 (MQ=255)                                                                                                                                            tGCGATTCCTTCAATTAAGCAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCaaa  <  2:823099/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               TCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTA‑CTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAA  >  NC_000913_3_hsa_tpiA/4555226‑4555513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.