| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 3986604 = | 73 (1.260) | 5 (0.090) | 5/256 | 7.0 | 6.9% | noncoding (173/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913_3_hsa_tpiA | 3986634 = | 67 (1.250) | noncoding (203/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGCACAAGCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGCAGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/3986763‑3986604‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcaggcgttTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCTTGTGCAGTCTGTCCAGCGC > NC_000913_3_hsa_tpiA/3986634‑3986775 CTGCACAAGCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGG < 1:845603/150‑1 cGCACAAGCCGGAAGAAGGTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGA < 2:20178/149‑1 CACAAGCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACCGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTCATTACGGAGC > 2:170324/1‑150 CACAAGCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCACCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGC > 2:445806/1‑150 CCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGCAGGCGT < 1:622437/150‑1 AGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGCAGGCG < 1:297259/135‑1 AGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGCAGGCG > 2:297259/1‑135 CCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGC < 1:207084/64‑1 CCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGC > 2:207084/1‑64 GGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGA > 1:920203/1‑150 TAAAAAAACGCCTGCTCTTATTACGGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAA > 2:102079/1‑118 TAAAAAAACGCCTGCTCTTATTACGGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAA < 1:102079/118‑1 AAAAACGCCTGCTCTTATTACGGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTT > 2:305430/1‑150 CCTGCTCTTATTACGGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCTT < 2:920203/150‑1 gAGGCGTTTTTTTATGTAGCAGGAAGGCCCCGGAGGTGCGTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCTTGTGCAGTCTGTCCAGCGC < 2:688618/149‑1 GCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAA < 1:891872/57‑1 GCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAA > 2:891872/1‑57 CTGCACAAGCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGCAGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_tpiA/3986763‑3986604‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcaggcgttTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCTTGTGCAGTCTGTCCAGCGC > NC_000913_3_hsa_tpiA/3986634‑3986775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |