mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 25.0% | 78.6 / 26.8 | 57 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_tpiA | 3,959,515 | 0 | T | A | 20.5% | 82.2 / 18.3 | 39 | intergenic (+70/+17) | ilvC/ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 4038798 | 39 (1.010) | 8 (0.220) | 8/268 | 3.3 | 19.0% | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| ? | NC_000913_3_hsa_tpiA | = 4038805 | 31 (0.840) | noncoding (1287/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3944991 | NA (NA) | 8 (0.220) | 8/268 | 3.3 | 17.6% | noncoding (1288/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4038798 | 39 (1.010) | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 227052 | 38 (0.990) | 8 (0.220) | 8/268 | 3.3 | 17.5% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 4038792 | 39 (1.060) | noncoding (1274/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3944978 | NA (NA) | 7 (0.190) | 7/268 | 3.6 | 19.1% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4038811 | 31 (0.810) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2727891 = | NA (NA) | 7 (0.190) | 7/268 | 3.6 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 227052 | 38 (0.990) | 7 (0.190) | 7/268 | 3.6 | 16.1% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2065027 = | 34 (0.880) | 5 (0.130) | 5/274 | 4.5 | 13.7% | coding (196/744 nt) | cobS | cobalamin synthase |
| ? | NC_000913_3_hsa_tpiA | 2065048 = | 30 (0.800) | coding (175/744 nt) | cobS | cobalamin synthase | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2729475 = | 42 (1.090) | 4 (0.110) | 4/260 | 4.7 | 11.6% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | = 4168345 | 22 (0.620) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2729443 = | 35 (0.910) | 4 (0.110) | 4/260 | 4.7 | 10.6% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913_3_hsa_tpiA | 2729485 = | 35 (0.980) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1203761 | 31 (0.810) | 4 (0.110) | 4/264 | 4.8 | 11.9% | coding (494/558 nt) | ymfL | e14 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913_3_hsa_tpiA | = 1203775 | 30 (0.830) | coding (508/558 nt) | ymfL | e14 prophage; putative DNA‑binding transcriptional regulator | |||||