New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 71522148 (1.360)4 (0.120) 4/258 4.2 8.5% intergenic (+23/‑191) pgm/ybfP phosphoglucomutase/lipoprotein
?NC_000913_3_hsa_tpiA = 715231 42 (1.290)intergenic (+33/‑181) pgm/ybfP phosphoglucomutase/lipoprotein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGTCCGTCAGGCACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAA  >  NC_000913_3_hsa_tpiA/715075‑715364
                                                                                                                                                  |                                                                                                                                               
gcgTCCGTCAGGCAAGGAAGACGCATAAAAGAACTAATGAGAAAGCTTACTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAAAAAAAAAAAAAAAAAAAGGGCGGt                                                                                                                                               <  2:49270/149‑1 (MQ=255)
      gtcAGGCACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAg                                                                                                                                         >  2:20185/1‑149 (MQ=255)
           gCACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGc                                                                                                                                    >  1:456836/1‑149 (MQ=255)
            cACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGcc                                                                                                                                   <  2:199880/149‑1 (MQ=255)
            cACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGcc                                                                                                                                   <  2:119230/149‑1 (MQ=255)
             aCGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAGGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGccc                                                                                                                                  >  1:41783/1‑149 (MQ=255)
             aCGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGccc                                                                                                                                  >  2:579482/1‑149 (MQ=255)
              cGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCt                                                                                                                                 <  2:456836/149‑1 (MQ=255)
                gAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGCACGGTCGCAAGATCGCCAttt                                                                                                                               >  2:358045/1‑149 (MQ=255)
                                     tGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGCAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGCGCGGTCGCAAGATCGCCCTTTTTTACGTATGCCAAACACAGa                                                                                                          >  2:108550/1‑149 (MQ=255)
                                     tGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGGAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGa                                                                                                          >  1:4/1‑149 (MQ=255)
                                              ttCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGa                                                                                                 >  1:567460/1‑149 (MQ=255)
                                                 cTCGGTGAAGAACATCGCCAGCCGATTGAGAAACAAGCGGTTGAGATTGCTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAACGGCGGCCGCACGATCGCCCTTTTTTCCGTATGCCAAACACCGAATTCCCTGAtcc                                                                                              >  2:446008/1‑147 (MQ=255)
                                                  tCGGTGAAGAACATCGCAAACAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGCCGGTCGCACGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATgcg                                                                                             >  2:525969/1‑149 (MQ=255)
                                                          gaaCGTCGCAAGCAGATTGAGAAAGAAGCGGGTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGTGGTCGCTAGATCGCCCTTTTTTACGTATGAAAAACACAGAATTGCCTGATGCGCTACGCtt                                                                                     >  2:475093/1‑149 (MQ=255)
                                                           aaCATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAACAGGACGACCACAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTa                                                                                    >  1:145652/1‑149 (MQ=255)
                                                           aaCATCGCAAGCAGATTGAGAAACAAGCGGTTGAGATTGTTAGCGCAGTTCTGAAAAACGCGTAAACACATTTAATAATAAAAGGGCTGTCTCAGGATCGCCCTCTTTTACGTATGACAGACACAGAATTGCCTGATGCGCTACGCTTa                                                                                    <  1:525969/149‑1 (MQ=255)
                                                                 gaaaGCAGACTGAGAAAGAAGCGGTGGAGTGTTTCAGCGAAGTTGTGAAAAACGTCTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGTTCGTCTTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGc                                                                              <  2:208658/147‑1 (MQ=37)
                                                                 gCAAGCAGATTGAGAAAGAAGCGGTTGAGATGGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGc                                                                              <  1:503923/149‑1 (MQ=255)
                                                                  cAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAACGAAGTTCGGAAAAACGCGTAAACACACTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACAAAGAATTGCCTGATGCGCTACCCTTATCAGGcc                                                                             >  2:299414/1‑149 (MQ=255)
                                                                         aTTGAGAAAGAAGGGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAgg                                                                      <  2:510946/149‑1 (MQ=255)
                                                                           tGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGAt                                                                    <  2:490144/149‑1 (MQ=255)
                                                                            gagaAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAg                                                                                                           >  1:215176/1‑109 (MQ=255)
                                                                            gagaAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAg                                                                                                           <  2:215176/109‑1 (MQ=255)
                                                                             agaaagaaGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCACCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATgg                                                                  >  2:231807/1‑149 (MQ=255)
                                                                                 agaagCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCa                                                              >  2:597998/1‑149 (MQ=255)
                                                                                 agaagCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCa                                                              >  1:165539/1‑149 (MQ=255)
                                                                                        gTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATAtt                                                       <  2:487846/149‑1 (MQ=255)
                                                                                        gTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATAtt                                                       <  1:366076/149‑1 (MQ=255)
                                                                                        gTTGAGATTGTGAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATAtt                                                       <  2:121037/149‑1 (MQ=255)
                                                                                            agaTTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGCCCAACACAGAGTTGATACGAACTCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAAt                                                   <  1:147974/149‑1 (MQ=255)
                                                                                                  ttAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGc                                             <  1:597998/149‑1 (MQ=255)
                                                                                                           ttCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTAc                                                                                                                          >  1:208363/1‑63 (MQ=255)
                                                                                                           ttCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTAc                                                                                                                          <  2:208363/63‑1 (MQ=255)
                                                                                                           ttCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCACCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTa                                    <  1:231807/149‑1 (MQ=255)
                                                                                                                aaaaaCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCg                               <  1:20185/149‑1 (MQ=255)
                                                                                                                        gTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGc                       >  1:571089/1‑149 (MQ=255)
                                                                                                                        gTAAACACATTTAATAAAAAAAGGGCGGGCGCAAGATCGGCCGTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGc                       <  1:108550/149‑1 (MQ=255)
                                                                                                                           aaCACCTTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGtt                    <  2:528579/149‑1 (MQ=255)
                                                                                                                           aaCACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGtt                    >  1:161776/1‑149 (MQ=255)
                                                                                                                           aaCACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGtt                    >  1:161630/1‑149 (MQ=255)
                                                                                                                            acacATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTGTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTc                   >  2:5847/1‑149 (MQ=255)
                                                                                                                                 tttAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGcc                                                                             >  2:66316/1‑86 (MQ=255)
                                                                                                                                 tttAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGcc                                                                             <  1:66316/86‑1 (MQ=255)
                                                                                                                                     ataaAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTAc                                                                                         >  1:88165/1‑70 (MQ=255)
                                                                                                                                     ataaAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTAc                                                                                         <  2:88165/70‑1 (MQ=255)
                                                                                                                                       aaaaaaaGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc        >  1:257961/1‑149 (MQ=255)
                                                                                                                                             aGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGccta  <  1:508803/149‑4 (MQ=37)
                                                                                                                                                  |                                                                                                                                               
GCGTCCGTCAGGCACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAA  >  NC_000913_3_hsa_tpiA/715075‑715364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.