New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 2066832	8 (0.230)	6 (0.180)	6/262	3.4	44.5%	coding (490/1017 nt)	insH1	IS5 transposase and trans‑activator
	?	NC_000913_3_hsa_tpiA	= 2102447	NA (NA)					coding (465/1017 nt)	insH1	IS5 transposase and trans‑activator
Rejected: Coverage evenness skew score above cutoff.

CTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAGGCCGCTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAG  >  NC_000913_3_hsa_tpiA/2066686‑2066866                                                                                                                                                   |                                   cTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAGGCCGCACTTCGCATCGACACCAATGTGAGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGc                                  >  1:305298/1‑149 (MQ=255)    gTTGGCCGTGGTGGTGACTAGGCTGTGCGTCCGTCCGATCTGGGCTGCGAGGTGAACGTGGGGCTTCATGCCAAAGTGCCACTGATTGGCTTTCTTGGTCTGATGCAGCTCCGGAGCGTGGTGTTGCTCTCTGTTCTTGGTCGAGCTgg                               <  2:508641/149‑1 (MQ=2)                   gACTAGGCTGTGGGTCAGGCCGCTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAtgg                >  1:575570/1‑149 (MQ=35)                    aCTAGGCTGTGGGTCAGGCCGCTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAtggt               >  2:53566/1‑149 (MQ=35)                      tAGGCTGTGGGTCAGGCCGCTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAtggtgg             >  1:278050/1‑149 (MQ=33)                          cTGTTGGTCAGGCCGCTTTGGGCATCGGCACCAATGTGGGCCGTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAtggtgaacgc         <  2:77660/149‑6 (MQ=11)                                gTCAGGCCGCTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCaa   <  1:368285/149‑1 (MQ=32)                                 tCAGGCCGCTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAg  <  1:78300/149‑1 (MQ=32)                                                                                                                                                   |                                   CTCGTTGGCCGCGGTGGTGACTAGGCTGTGGGTCAGGCCGCTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAG  >  NC_000913_3_hsa_tpiA/2066686‑2066866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.