New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2798052 =	NA (NA)	5 (0.140)	5/276	4.0	NA	intergenic (+8/+39)	ygaP/stpA	DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated
	?	NC_000913_3_hsa_tpiA	2798084 =	NA (NA)					intergenic (+40/+7)	ygaP/stpA	DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated
Rejected: Coverage evenness skew score above cutoff.

TTATACCGTAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGACCGGTCCAGGTTTTAGTTTCACCGTTAACATCGGT  >  NC_000913_3_hsa_tpiA/2797915‑2798198                                                                                                                                          |                                                                                                                                                   ttATACCGTAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcgg                                                                                                                                         >  1:11656/1‑148 (MQ=255)     aCCGTAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCGAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTa                                                                                                                                     >  2:552690/1‑149 (MQ=255)      ccGTAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGGGCTTGAGAAGAGAGGCCCGACGCGCCCTag                                                                                                                                    >  1:67674/1‑149 (MQ=255)       cGTAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTagc                                                                                                                                   >  1:312846/1‑149 (MQ=255)         tAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATCAGATGCCGTGGAACGAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTagcag                                                                                                                                 <  2:546871/149‑1 (MQ=255)         tAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTAGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAGGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGTGCGCGCCCGcgcag                                                                                                                                 >  2:40545/1‑149 (MQ=255)           aaTAGCGGGTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGAGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGTCGGACGCGCCCTAGCAGCg                                                                                                                               <  2:272887/149‑1 (MQ=255)                  gTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCg                                                                                                                        >  1:350418/1‑149 (MQ=255)                     tcttctTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGcc                                                                                                                     >  1:402290/1‑149 (MQ=255)                                              tGCCGGGTTACTGTTTGCAGGAATCAGCGGTATTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGACTCAGTAATTAGATCAGGAAAtcgtc                                                                                            >  1:370374/1‑149 (MQ=255)                                              tGCCGGGGCACTGTTTTCAGGAATCAGCGGTTTTTGGGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgtc                                                                                            <  1:579452/149‑1 (MQ=255)                                               gCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgtcg                                                                                           >  2:340543/1‑149 (MQ=255)                                                     tgagtGTTTCCAGGCATGAGCGGTTTTTGTGGAACGGCAAGGTTGTTAGAGAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCTCCATTACAGCGATGTTCGGCCTCAGTTATTAGATCAGGAAATCGTCGAGAGAt                                                                                     <  1:24050/145‑1 (MQ=255)                                                           tttGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACCTCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCt                                                                               >  1:588577/1‑149 (MQ=255)                                                                        gCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAAAGATTTAACTTCTGCCCGCGCCt                                                                  >  2:562863/1‑149 (MQ=255)                                                                         cGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTg                                                                 <  1:397408/149‑1 (MQ=255)                                                                           gTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAg                                                               <  1:340543/149‑1 (MQ=255)                                                                           gTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAg                                                               <  2:402290/149‑1 (MQ=255)                                                                                tgtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAGTTTTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAAtt                                                          <  2:264237/149‑1 (MQ=255)                                                                                      aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTc                                                    >  1:27174/1‑149 (MQ=255)                                                                                       tGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGGTTTACCTTCTGCCAGCGCCTGGGCAATTGGCTTCg                                                   >  1:22637/1‑149 (MQ=255)                                                                                                       tAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAACTGGCTTCGGTGTACGGCCCTGAcc                                   <  2:350418/149‑1 (MQ=255)                                                                                                        aaGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGACCg                                  <  1:314905/149‑1 (MQ=255)                                                                                                            tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGACCGGTcc                              >  1:163088/1‑149 (MQ=255)                                                                                                                   gAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGCCCGGTCCAGGtttt                       >  2:263324/1‑149 (MQ=255)                                                                                                                          cGAGCTTGAGAAGCGACCCCGCACGCGCCTTAGCAGCGACACCCGGCCTCACTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGACCGGTCCAGGTTTTAGTTTCa                <  1:40545/149‑1 (MQ=255)                                                                                                                                  agaAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGACCGGTCCAGGTTTTAGTTTCACCGTTAAc        <  1:404012/149‑1 (MQ=255)                                                                                                                                    aaGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGACCGGTCCAGGTTTTAGTTTCACCGTTAACAt      >  2:174853/1‑149 (MQ=255)                                                                                                                                       cGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGACCGGTCCAGGTTTTAGTTTCACCGTTAACATCgg   <  2:456796/149‑1 (MQ=255)                                                                                                                                        gACGCCGGACGCGCCCTAGCAGCGACATCCGGCCCCAGGAATTAGATCAGTAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGACCGGTCCAGGTTTTAGTTTCACCGTTAACATCGGt  >  2:614441/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                   TTATACCGTAAATAGCGGTTTCTTCTTATTAAGTGGCTTTGTTGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCCCTGACCGGTCCAGGTTTTAGTTTCACCGTTAACATCGGT  >  NC_000913_3_hsa_tpiA/2797915‑2798198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.