New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1287077 =	41 (1.050)	7 (0.190)	7/272	3.8	15.5%	noncoding (160/171 nt)	rttR	rtT sRNA, processed from tyrT transcript
	?	NC_000913_3_hsa_tpiA	1287111 =	37 (0.980)					noncoding (126/171 nt) coding (66/90 nt)	rttR tpr	rtT sRNA, processed from tyrT transcript protamine‑like protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTTCGGGTCGTTGCCTGCGGCAACGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTG  >  NC_000913_3_hsa_tpiA/1286928‑1287217                                                                                                                                                       |                                                                                                                                             ccTTCGGGTCGTTGCCTGCGGCAACGCTCTC‑TCGCAGACCCGCGGGCCGACCCTTAGTCGAAGCGTCTCATCCCTCCCCTCAAGGTCGGAAGACGTCATTGCGGATTAACATAAGAGTTCAGGGACTTTTGAAAGTGATGGAgggggggg                                                                                                                                              >  2:444536/1‑150 (MQ=9)   ttCGGGTCGTTGCCTGCGGCAACGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGCGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGaa                                                                                                                                            >  2:95969/1‑150 (MQ=255)    tCGGGTCGTTGCCTGCGGCAACGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAg                                                                                                                                           <  1:404260/150‑1 (MQ=255)     cGGGGCGTTGCCTGCGGCAACGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCGCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAgg                                                                                                                                          <  1:183320/150‑1 (MQ=255)      gggTCGTTGCCTGCGGCAACGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa                                                                                                                                         >  1:97854/1‑150 (MQ=255)       ggTCGTTGCCTGCGGCAACGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAt                                                                                                                                        <  1:336930/150‑1 (MQ=255)         gcGTTGCCTGCGGCAACG‑TCTCTTCTCTGCCCCCCGAGGCGAACCTTAGTCGAAGCTTTCTATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                      <  1:124818/149‑1 (MQ=14)           gTTGCCTGCGGCAACGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACt                                                                                                                                    >  2:653619/1‑150 (MQ=255)                   cGGCAACGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACCCAGCGCTg                                                                                                                            >  1:282214/1‑150 (MQ=255)                    ggCAACGCTCCC‑TCGCTGACGCTCAAGCCGAACCTTAGTCGAAGCTTCTAATACGTCCCCGCATGGGCAGAATATTTGATTGCGGAGGCGTATGAGAGTTTAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgc                                                                                                                           <  2:261693/150‑1 (MQ=14)                        aCGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgcgc                                                                                                                       >  2:139940/1‑150 (MQ=255)                         cGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCCTAACCTCTacgcgca                                                                                                                      >  2:66333/1‑149 (MQ=17)                           ctctc‑tCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTATTATTCGCCCCTCCGTGGGGCGGAAAGTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc                                                                                                                    >  1:508535/1‑150 (MQ=17)                                     tGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATAGGCCGAATATTTGATTTCGGATTCGCTTGAGAGTTCAGGGACTTTTTAAAGTGATGGTGGTGGGGGATGGATGCCTCAGCGCTACGCGCATGACCCCTCgg                                                                                                           >  2:418739/1‑150 (MQ=17)                                        cGCTCGGGCCGAACCTTAGTCCAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTc                                                                                                        <  1:79800/150‑1 (MQ=255)                                            cGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGGGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCACTTCGGGTCGTTg                                                                                                    >  1:594850/1‑150 (MQ=255)                                             gAGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCCGGGGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGc                                                                                                   <  1:362812/150‑1 (MQ=14)                                                             gAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAACGCTTCGCGCTTCGCCCTTCGGGTCCTTCCCCACGGCCACGatctc                                                                                   >  2:448137/1‑150 (MQ=14)                                                                  ttCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCt                                                                              <  2:97854/150‑1 (MQ=255)                                                                   tctcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTg                                                                             <  1:139940/150‑1 (MQ=255)                                                                       aTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGc                                                                                       >  2:326207/1‑136 (MQ=255)                                                                       aTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGc                                                                                       <  1:326207/136‑1 (MQ=255)                                                                              cccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGGGtg                                                                  >  1:158596/1‑149 (MQ=255)                                                                                 gCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc                                                                                                             <  1:458816/104‑1 (MQ=255)                                                                                 gCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc                                                                                                             >  2:458816/1‑104 (MQ=255)                                                                                      ggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTg                                                          >  1:375713/1‑150 (MQ=255)                                                                                         aGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTc                                                       <  1:229248/150‑1 (MQ=255)                                                                                           aaTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTTGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGa                                                     >  1:672549/1‑150 (MQ=255)                                                                                                       cGGATTCGCTTGAGAGTTCAGGGTCTTTTGAAGGTGACGGTGGTGGGGTAAGGATTACGCAGCGCTGCGCGCTTCCCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATcc                                         <  2:282214/150‑1 (MQ=14)                                                                                                           ttCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTcc                                     >  1:375820/1‑150 (MQ=255)                                                                                                              gCTTGAGAATTCAGGGACTTTTGAAATGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTTGAAGCTGCTCATCCTTCCCCg                                  >  2:291856/1‑150 (MQ=14)                                                                                                                    gagTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct                                                                                      >  1:58067/1‑92 (MQ=255)                                                                                                                    gagTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct                                                                                      <  2:58067/92‑1 (MQ=255)                                                                                                                      attCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                          <  1:114715/149‑1 (MQ=17)                                                                                                                       ttCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAg                         >  1:561543/1‑150 (MQ=255)                                                                                                                       ttCAGGGACTTTTGAAAGTGATGGTGGTGGGGAGATTATTACGCCGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAg                         >  1:680704/1‑150 (MQ=14)                                                                                                                          aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAat                      >  1:255333/1‑150 (MQ=255)                                                                                                                          aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAat                      >  1:41919/1‑150 (MQ=255)                                                                                                                            gggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAatat                    >  2:460498/4‑150 (MQ=11)                                                                                                                                    gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGc            <  1:460498/150‑1 (MQ=255)                                                                                                                                              gtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTg  <  1:548870/150‑1 (MQ=38)                                                                                                                                                       |                                                                                                                                             CCTTCGGGTCGTTGCCTGCGGCAACGCTCTC‑TCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTG  >  NC_000913_3_hsa_tpiA/1286928‑1287217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.