New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	4542664 =	51 (0.820)	7 (0.120)	7/262	6.8	12.8%	intergenic (+49/‑433)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913_3_hsa_tpiA	4542978 =	48 (0.820)					intergenic (+363/‑119)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAA  >  NC_000913_3_hsa_tpiA/4542516‑4542811                                                                                                                                                     |                                                                                                                                                    ccATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAt                                                                                                                                                     >  2:931450/1‑149 (MQ=255)  cATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAtt                                                                                                                                                    <  1:587996/149‑1 (MQ=255)       tgggcattATAACCCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGc                                                                                                                                               <  1:519852/143‑1 (MQ=255)         tgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTgg                                                                                                                                                  >  2:491681/1‑144 (MQ=255)         tgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGCTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTgg                                                                                                                                                  <  1:491681/144‑1 (MQ=255)           cgatagaCCGCCAGTAAGAGTGATCGTTATGCCGGATTATGGGAAAGAAAGAATCTTACAAAAGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGAAAAAAAAACAAGTAAATACAAGACAATTGGGGCCaaa                                                                                                                                           <  2:361238/143‑1 (MQ=255)             ttATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAtt                                                                                                                                                    >  2:868056/1‑138 (MQ=255)             ttATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAtt                                                                                                                                                    <  1:868056/138‑1 (MQ=255)               aaaacGCCAGCAATGCTGCGTGATTTGTCGGATAATGAGAAAGAAAGAATCAGATAAACGAAAAATGAAAAAGAGAATAGGTTTGAGTTTACTTAATGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt                                                                                                                                       <  2:721244/145‑1 (MQ=255)                taCCGCCAGTAATGGTACTAGTTATGCCTGATTATGGAAAAGAAATAATCACAAAAAAGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc                                                                                                                                      <  2:341906/149‑1 (MQ=255)                aaccgataGTAAAGCTGCTCTTTTTGGCGGATGATTGGAAAGAAATAATTTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc                                                                                                                                      <  2:1007399/142‑1 (MQ=255)                 aCCGCCATTAATGCTGCTCGTTTTTCCGGATTATGGGAAAGAAATAATCTCCAAATGCTTTCCGGAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                     <  1:254868/149‑1 (MQ=255)                     ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat                                                                                                                                 <  1:931123/149‑1 (MQ=255)                       aGTAATGCTGCTCGGTTTGCCGGATTATGGGAAAGAAATAATCTCATACACGAAAAATTAAAAAGAGAAGAGGGTTGATTTAACTTATTGATAATAAAGTTAAAAAAACCAATAAATACAACACAATTGGAGCCAAACTGTCCATATCa                                                                                                                               >  2:258659/1‑149 (MQ=255)                              ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACGAGACAATTGGGGCCAAACTGTCCATATCataaataa                                                                                                                        <  1:18542/149‑1 (MQ=255)                              ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTAGGGCCAAACTGTCCAAATAaaaaataa                                                                                                                        >  2:921909/1‑149 (MQ=255)                                gctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt                                                                                                                      <  2:886886/149‑1 (MQ=255)                                gctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt                                                                                                                      >  1:1079472/1‑149 (MQ=255)                                 ctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt                                                                                                                     <  1:931450/149‑1 (MQ=255)                                  tCGTTTGGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa                                                                                                                    <  1:893919/149‑1 (MQ=255)                                           cGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt                                                                                                           >  1:744688/1‑149 (MQ=255)                                            ggATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt                                                                                                          >  2:560294/1‑149 (MQ=255)                                                  tGGGAAAGAAATAATCTCATAAACGACAACTTACGAATAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg                                                                                                    >  1:816336/1‑149 (MQ=255)                                                  tGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAATTAAAAAAACAAATAAATACAAGACAATTAGCGCCAAACTGTCCATATCCTAAATAAACTCCATAttttttaccaat                                                                                                    >  2:195656/1‑143 (MQ=255)                                                     gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATTCTAAATAAGTTACGTATTTTTTCTCagtcat                                                                                                 >  2:323349/1‑144 (MQ=255)                                                     gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa                                                                                                                               <  2:325463/119‑1 (MQ=255)                                                     gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa                                                                                                                               >  1:325463/1‑119 (MQ=255)                                                                    aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTGCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                                  >  1:426670/1‑149 (MQ=255)                                                                          gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATAATAAAAAAGTGACGTATTTTTTCTCAAGCATAAAAATATTTAAAAACGACaa                                                                            >  1:637092/1‑149 (MQ=255)                                                                           aaaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa                                                                           >  1:517450/1‑149 (MQ=255)                                                                                ttAAATAGAGAAGAGGGTTGATTTAACTTATTGATAATAAAGTGAAAAAAACAAATAAATACTTTACAATTGGGGCCAAACTGTCCATATCATAACAAAGGTACTTCTTTTTTCTCAAGCATAGAAAAATTAAAAATCGGCtaaagcca                                                                      >  2:704284/1‑145 (MQ=255)                                                                                      agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCAATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAAc                                                                >  2:917116/1‑149 (MQ=255)                                                                                               gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTGTCAAGCATAAAAATATTAAAAAACAACAAAAAGCATCTAACTGTTTGata                                                       >  1:384323/1‑149 (MQ=255)                                                                                                     tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaaa                                                 <  1:694482/149‑1 (MQ=255)                                                                                                       tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATGTTAAAAAGCGACAAAAAGCATCTAACTGTTTGATATGTAAatt                                               >  1:203901/1‑149 (MQ=255)                                                                                                           ttATTGATAATAAAGTTAAAAAAACAAATAAATACAGGACAATTGGGGCCAAACTGTc                                                                                                                                      <  1:758989/58‑1 (MQ=255)                                                                                                           ttATTGATAATAAAGTTAAAAAAACAAATAAATACAGGACAATTGGGGCCAAACTGTc                                                                                                                                      >  2:758989/1‑58 (MQ=255)                                                                                                           ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGCCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                           >  1:1084608/1‑149 (MQ=255)                                                                                                           atATTGATAATAAAGTAAAAAAAACAAATAAATAAAAGACAATTGGGGCAAAACTGTCAATATCATAAATAAGTTACGCATTTTTTCTCAAGCATAAAAATATTAACAAACGAGAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                           <  2:187002/148‑1 (MQ=255)                                                                                                                      aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAACAAGCATCTAACTTTTTGATATTTAAATTATTTTTATGTTAaat                                >  2:323198/1‑149 (MQ=255)                                                                                                                       aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatt                               <  1:560294/149‑1 (MQ=255)                                                                                                                        aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                        >  1:850977/1‑123 (MQ=255)                                                                                                                        aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                        <  2:850977/123‑1 (MQ=255)                                                                                                                         gatAAAAAACCAAACAAAAACAAGACAAATGGGGCCAAACTGTACATATCATACAAAAGTTACGTATTTTTTGTCAAGCATACAAATATTAAAAAACGACAAAAACCATCTAACTATTTGATATGTAAATTATTGACATTGTAaattaa                             >  2:33523/3‑149 (MQ=255)                                                                                                                           tAAAAAAACAAAAACAGACAATACAATTGGTGCCTCACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAGTCCAATTAAAGGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaatt                           <  1:258659/149‑1 (MQ=255)                                                                                                                            aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                          <  2:816336/149‑1 (MQ=255)                                                                                                                                     aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                      >  2:739883/1‑128 (MQ=255)                                                                                                                                     aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                      <  1:739883/128‑1 (MQ=255)                                                                                                                                               aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTatat       <  2:1079472/149‑1 (MQ=255)                                                                                                                                                   aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc                                                                                 >  2:92011/1‑71 (MQ=255)                                                                                                                                                   aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc                                                                                 <  1:92011/71‑1 (MQ=255)                                                                                                                                                    tttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTGGTGTAATTTAATTTCACATCACCTCCGCTCTATGTaaa  >  1:854058/2‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAA  >  NC_000913_3_hsa_tpiA/4542516‑4542811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.