New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 39460534 (0.060)9 (0.150) 8/272 6.9 69.8% noncoding (2350/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
?NC_000913_3_hsa_tpiA = 3946069 NA (NA)noncoding (2366/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
Rejected: Coverage evenness skew score above cutoff.

GACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCG‑GTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA  >  NC_000913_3_hsa_tpiA/3945907‑3946061
                                                                                                                                                   |        
gACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGCGTGAAC‑GCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGa        <  1:1111843/149‑1 (MQ=11)
  cccGTGATCCGCGTAGTGGACAGTGTCTGCTGGGTAGTTTGACTGAGGCT‑GTCTGCTCCTAAAGAGTAACGGAGGAGCACGACGGATGGCTAATCCTGGTAGGACATCAGGAGGTTAGTGAACTGGCATAAGCCAGCTTGACTTGGAGc      >  2:1025911/1‑149 (MQ=11)
     gTGATCCGGGTTGCGGACAATGTCTGGTAGGTCGATTGACAGGGGCG‑GTCTCCTCATAAAGAGTAACGGAGGGGCACGAAGTTTGGCGAATCCTGATCGGACATCAGGAGGTTAGTGCAAGGGCATAAGCCAGCTTGCCTGCGAGCGTg   >  2:511935/1‑149 (MQ=11)
      tGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCG‑GTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGa  >  2:148287/1‑149 (MQ=31)
                                                                                                                                                   |        
GACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCG‑GTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA  >  NC_000913_3_hsa_tpiA/3945907‑3946061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.