New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4414215	18 (0.760)	3 (0.130)	3/268	3.1	14.3%	intergenic (+42/‑42)	yjfC/aidB	ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase
	?	NC_000913_3_hsa_tpiA	= 4414231	19 (0.850)					intergenic (+58/‑26)	yjfC/aidB	ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGG  >  NC_000913_3_hsa_tpiA/4414072‑4414347                                                                                                                                                |                                                                                                                                     tGGATTGTCGATGATGAAGCGTGCGGAATGTGGATCCGTCAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCa                                                                                                                                 <  1:346910/149‑1 (MQ=255)             gatgaAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGa                                                                                                                     <  1:375153/149‑1 (MQ=255)              atgaAGCGTGCGGAAGGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGAc                                                                                                                    <  1:276041/149‑1 (MQ=255)                            aTGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTCACCATTAGTATGGTCACTGCCATGGAttcat                                                                                                      <  2:12592/149‑5 (MQ=38)                             tGGTGATCCGTGAACATAACCCACTGTTCACCACAGACACCTCCCGTTTCGTTCCGCATTACATTGCTGTATAAGAATGTTTTTGCAATCTCTTTCTGTCAGGATGCCATGGCAGTGACCATACTGATGGTGACTGCCATTGATggagg                                                                                                     <  2:413324/149‑1 (MQ=255)                             tGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATggagg                                                                                                     <  2:401875/149‑1 (MQ=255)                                ggATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATggagggag                                                                                                  <  1:281543/149‑1 (MQ=255)                                      gTGAAGATAACACACTGATGACCAAAGACACCTCACGCTTCGTGCGGTATTACAAAGCTCATTTAGATTGTTTTATCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGGCATTGATGGGGGGAGACACAg                                                                                            >  2:299479/1‑149 (MQ=255)                                                       aTCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGGCTGCCATGTATGGATGGAGACACAGTGCACTGGCAAACTcac                                                                           >  1:325903/1‑149 (MQ=255)                                                                   acCTGACGTTTCGTTCCGCATTACATTGCTGGGTAAGTATATTATCGCCATTACTTTTTTTCATGAATCCATGGCAGTGACCAGACGAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAAt                                                               <  2:402677/149‑1 (MQ=255)                                                                      tCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCag                                                            >  1:55651/1‑148 (MQ=255)                                                                            tttgTTCCGCGCTCCCTTGCTGGATAAGAATGTTTTAGCCATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCtata                                                      <  1:193163/146‑1 (MQ=255)                                                                            ttCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCtata                                                      <  1:252766/149‑1 (MQ=255)                                                                                                  gATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTtat                                <  1:109114/149‑1 (MQ=255)                                                                                                   aTAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAAc                                    >  2:45835/1‑144 (MQ=255)                                                                                                   aTAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAAc                                    <  1:45835/144‑1 (MQ=255)                                                                                                                      ctctTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGctc            >  2:323027/1‑149 (MQ=255)                                                                                                                         tttCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGc         >  1:255203/1‑149 (MQ=255)                                                                                                                                cATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTGGTAATCAACCTAAACCATTAACTAACAGCAACTTATACCTGTCTGATGGCGCGCCCTGCGagccgg  >  2:105486/1‑144 (MQ=255)                                                                                                                                                |                                                                                                                                     TGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACACTGATCACCAAAGACACCTCACGTTTCGTTCCGCATTACATTGCTGGATAAGAATGTTTTAGCAATCTCTTTCTGTCATGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGACACAGTGCACTGGCAAACTCACACCGTTTTTAATCAACCTATACCATTAAATAACAGCAACTTATACCTGTCTGATGGCGCGCTCTGCGAAGCGG  >  NC_000913_3_hsa_tpiA/4414072‑4414347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.