New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 656828	13 (0.550)	4 (0.170)	4/280	2.8	22.3%	coding (272/561 nt)	pagP	phospholipid:lipid A palmitoyltransferase
	?	NC_000913_3_hsa_tpiA	= 656848	15 (0.640)					coding (292/561 nt)	pagP	phospholipid:lipid A palmitoyltransferase

AACATTATGATTTATATATTCCTGCCATCACCTGGCATGCACGTTTCGCTTACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCGTGGAACAAATGGGAACCGATTGCCGGATACGGATGGGAAAGTACCTGGCGACCGCTGGCGGATGAAAATTTTCATTTAGGTCTGGGATTCACCGCTGGCGTAACG  >  NC_000913_3_hsa_tpiA/656693‑656967                                                                                                                                        |                                                                                                                                            aaCATTATGATTTATATATTCCTGCCATCACCTGGCATGCACGTTTCGCTTACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTAt                                                                                                                                <  2:58032/149‑1 (MQ=255)       aTGATTTATATATTCCTTCCATCACCTGGCATGCACGTTTCGCTTACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATg                                                                                                                          <  1:283754/149‑1 (MQ=255)                      cTGCCATCACCTGGCATGCACGTTTCGCTTACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCg                                                                                                           <  1:341737/149‑1 (MQ=255)                           aTCACCTGGCATGCACGTTTCGCTTACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCGTggca                                                                                                      >  2:282524/1‑147 (MQ=255)                               ccTGGCATGCACGTTTCGCTTACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCGTGGAACaaa                                                                                                  <  2:209003/149‑1 (MQ=255)                                         aCGTTTCGCTTACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGgcatggcatacaggccatgcca                                                                                                                       >  2:169327‑M1/1‑96 (MQ=255)                                         aCGTTTCGCTTACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGgcatggcatacaggccatgcca                                                                                                                       <  1:169327‑M1/118‑23 (MQ=255)                                           gTTTCGCTTACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCGTGGAACAAATGGGAACCGAtt                                                                                      >  1:258539/1‑149 (MQ=255)                                                  ttACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCGTGGAACAAATGGGAACCGATTGCCGGAt                                                                               >  2:312024/1‑149 (MQ=255)                                                     cGACAAAGAAAAAACGGATCGCTATAACGAGCGACCGTGGGGTGGCAGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTTTATGCCATGGCATTTAAGGACTCGTGGAACAAATGGGAACCGATTGCCGGATACg                                                                            <  2:286258/149‑1 (MQ=255)                                                                           tataACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCGTGGAACAAATGGGAACCGATTGCCGGATACGGATGGGAAAGTACCTGGCGAcc                                                      >  1:235796/1‑149 (MQ=255)                                                                              aaCGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGccatggcatacaggccatgccagtttc                                                                                                                  >  1:330580‑M1/1‑59 (MQ=255)                                                                              aaCGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGccatggcatacaggccatgccagtttc                                                                                                                  <  2:330580‑M1/86‑28 (MQ=255)                                                                                                ggCGGTTTTGGCCTGTCGCGTTTGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCGTGGAACAAATGGGAACCGATTGCCGGATACGGATGGGAAAGTACCTGGCGACCGCTGGCGGATGAAAATTTTCa                                 <  2:352034/149‑1 (MQ=255)                                                                                                     ttttGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCGTGGAACAAATGGGAACCGATTGCCGGATACGGATGGGAAAGTACCTGGCGACGGCTGGAGGATGAAAATGTTCCTTCAg                            >  1:347877/1‑149 (MQ=255)                                                                                                                 gcgTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCGTTGAACAAATGTGAACCGATTGCCGGATACGGATGGGAAAGTACCTGGCGACGGCTGGCGGATGAAAATTTTCATTTAGCTCTGGGATTCa                >  2:33726/1‑149 (MQ=255)                                                                                                                               aaGGAATCTGGGATGGCCTGTATGCCATGGCATTTAAGGACTCGTGGAACAAATGGGAACCGATTGCCGGATACGGATGGGAAAGTACCTGGCGACCGCTGGCGGATGAAAATTTTCATTTAGGTCTGGGATTCACCGCTGGCGTAACg  <  1:353077/149‑1 (MQ=255)                                                                                                                                  gAAACTGGCATGGCCTGTATGCCATGGcagtttcctttttcatcccaacgcgacaggccaaaaccgccaccccacggtcgctcgtt                                                              >  1:330580‑M2/1‑27 (MQ=255)                                                                                                                                  gAAACTGGCATGGCCTGTATGCCATGGcagtttcctttttcatcccaacgcgacaggccaaaaccgccaccccacggtcgctcgtt                                                              <  2:330580‑M2/86‑60 (MQ=255)                                                                                                                                       tGGCATGGCCTGTATGCCATGCcagtttcctttttcatcccaacgcgacaggccaaaaccgccaccccacggtcgctcgttatagcgatcggttttttctttgtcgtaagcgaaacgt                         >  2:169327‑M2/1‑22 (MQ=255)                                                                                                                                       tGGCATGGCCTGTATGCCATGCcagtttcctttttcatcccaacgcgacaggccaaaaccgccaccccacggtcgctcgttatagcgatcggttttttctttgtcgtaagcgaaacgt                         <  1:169327‑M2/118‑97 (MQ=255)                                                                                                                                        |                                                                                                                                            AACATTATGATTTATATATTCCTGCCATCACCTGGCATGCACGTTTCGCTTACGACAAAGAAAAAACCGATCGCTATAACGAGCGACCGTGGGGTGGCGGTTTTGGCCTGTCGCGTTGGGATGAAAAAGGAAACTGGCATGGCCTGTATGCCATGGCATTTAAGGACTCGTGGAACAAATGGGAACCGATTGCCGGATACGGATGGGAAAGTACCTGGCGACCGCTGGCGGATGAAAATTTTCATTTAGGTCTGGGATTCACCGCTGGCGTAACG  >  NC_000913_3_hsa_tpiA/656693‑656967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.