New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 2714357	NA (NA)	4 (0.200) +GCGGCGTGAACGCCTTATCC	4/244	2.5	NA	noncoding (75/98 nt)	RIP188 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP188 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_hsa_tpiA	= 3563652	NA (NA)					noncoding (71/98 nt)	RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

ACCGCAAACGACAGAAGAGTAATCTCAATGCCAGGTTTAAGCCTGGTATTAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACAAAACTCTCTTCAACACACTGAATAAAAGTGTGCAT  >  NC_000913_3_hsa_tpiA/2714209‑2714486                                                                                                                                                     |                                                                                                                                  aCCGCAAACGACAGAAGAGTAATATCAAGGACAGGATTAAGGCTGGTTGAAAAAGTTCTGGCAAACGAAAAACTGCCTGAGGCGCTACGCGTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGAt                                                                                                                                   <  1:201318/149‑1 (MQ=21)   cGCAAACGACAGAAGAGTAATCTCAATGCCAGGTTTAAGCCTGGTATTAAGAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATaa                                                                                                                                 <  1:209309/149‑1 (MQ=255)      aaaCGACAGAAGAGTAATCTCAATGCCAGGTTTAAGCCTGGTATTAAAAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTCCGTGGCTCCTGCAATATATTGAATTTGCACGATCTTTTAGGCCGGATAAGGc                                                                                                                              >  2:389880/1‑149 (MQ=255)                              gCCAGGTTTAAGCCTGGTATTAAAAGTGCTGGCACACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCATGatt                                                                                                      >  1:248270/1‑147 (MQ=255)                                   gTTTAAGCCTGGTATTAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAAGATATTGAATTTGCACGATCTTGTATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATACAgc                                                                                                 >  2:136894/1‑149 (MQ=255)                                           cTGGTATTAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCTGGATAAGGCGTGCACGCCGCATCCGGCATGAATAAAGCGCACTTTg                                                                                         >  1:32784/1‑149 (MQ=255)                                                         acTGGCAAACGCAAAACTTTCTGATGTGCTAAGTTTATCAGGCATACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAAt                                                                           <  1:245516/148‑1 (MQ=21)                                                          cTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATg                                                                          >  1:348118/1‑149 (MQ=255)                                                               aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCggg                                                                     <  2:138306/149‑1 (MQ=255)                                                                aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACACGTTAAATGCCGGGt                                                                    >  1:238544/1‑149 (MQ=255)                                                                        aCTGTCTGTTGCGTTATGGTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATccc                                                            <  1:399864/149‑1 (MQ=25)                                                                               gATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATgcggcgtgaacgccttatccgg                                                                                                             <  1:392733‑M1/93‑23 (MQ=255)                                                                               gATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATgcggcgtgaacgccttatccgg                                                                                                             >  2:392733‑M1/1‑71 (MQ=255)                                                                                    gcTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTAttttt                                                >  1:132920/1‑149 (MQ=255)                                                                                    gcTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTAttttt                                                >  1:150097/1‑149 (MQ=255)                                                                                      tACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTAt                                              <  2:150097/149‑1 (MQ=255)                                                                                                  gCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACaaaa                                  >  1:127255/1‑149 (MQ=255)                                                                                                  gCCTACGTGGCTCATGCAATATATTAAAGTTGCACGATATGGTAGACCGGATAAGGCGTTCACACCGCATCCGGCATGAATAAAGCGCACTTTGTCGAAAAGTAAAATGCAGGGTTGAATCCCGACATTATTTTTATCCAGCcaacaaa                                  >  2:310664/1‑144 (MQ=37)                                                                                                       cGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGCGTTTAATCCCGACATTATTTTTATACAACCACAAAActatc                             >  2:119592/1‑149 (MQ=255)                                                                                                           gCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACAAAACTCTCTTCa                         >  1:343123/1‑149 (MQ=255)                                                                                                               aTGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATgcggcgtgaacgccttatccggcctacaagatcgtgcaaattcaatatattgcat                                                                            >  2:124507‑M1/1‑39 (MQ=255)                                                                                                               aTGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATgcggcgtgaacgccttatccggcctacaagatcgtgcaaattcaatatattgcat                                                                            <  1:124507‑M1/94‑56 (MQ=255)                                                                                                                 gCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACAAAACTCTCTTCAacacac                   >  1:2004/1‑149 (MQ=255)                                                                                                                    atatatTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACAAAACTCTCTTCAACACACTGa                >  1:404236/1‑149 (MQ=255)                                                                                                                          tGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTGCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACAAAACTCTCTTCAACACACTGAATaaaa          <  2:331502/149‑1 (MQ=255)                                                                                                                          tGAATTGGCACGATCTTGGAGGCCGGATAAGGCGTTCACGCCGCATCCGGTATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACAAAACTCTCTTCAACACACTGAATaaaa          <  2:261678/149‑1 (MQ=255)                                                                                                                              ggtgaaCGATCTGGTAGGCCGGATAAGGCGTTCACGTCGCATCCGGCATGAATAAAGCGCATTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACAAAACTCTCTTCAACACACTGAGTAAAAgtgt      <  2:248270/144‑1 (MQ=38)                                                                                                                                tGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGGCAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACAAAACTCTCTTCAACACACTGAATACAAGTGTGc    <  2:282096/149‑1 (MQ=255)                                                                                                                                  cACGATCTTGTAGGCCGGATAAGGAAATCACGCCGCATCCGGCGTGAATAAAGCGGGCGTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACAAAACTCTCTTCAACACACTGAATAAAAGTGTGCAt  >  1:332955/1‑149 (MQ=255)                                                                                                                                         ttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTa                                               <  1:291794/97‑1 (MQ=255)                                                                                                                                         ttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTa                                               >  2:291794/1‑97 (MQ=255)                                                                                                                                                     |                                                                                                                                  ACCGCAAACGACAGAAGAGTAATCTCAATGCCAGGTTTAAGCCTGGTATTAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTTTGTCGACAAGTTAAATGCCGGGTTTAATCCCGACATTATTTTTATCCAGCCACAAAACTCTCTTCAACACACTGAATAAAAGTGTGCAT  >  NC_000913_3_hsa_tpiA/2714209‑2714486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.