| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 4557460 | 27 (1.140) | 4 (0.180) | 4/262 | 2.6 | 14.3% | coding (812/912 nt) | hypT | hypochlorite‑responsive transcription factor |
| ? | NC_000913_3_hsa_tpiA | = 4557471 | 23 (1.050) | coding (801/912 nt) | hypT | hypochlorite‑responsive transcription factor | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAGCTCGCTCATCGAAGAGACAAAAAAGGTGCTG > NC_000913_3_hsa_tpiA/4557339‑4557606 | gcAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGGCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACaa > 1:291248/1‑149 (MQ=255) gagaAGGTCAGCTAGGCACAATCTCCGGCTCGCGCAGTTCACGGCAGAAGCGTTCGGTAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTg < 2:11414/149‑1 (MQ=255) aaGCACAATCTGCCGCTGGCGCAGTTCACGCCAGAATCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCAGAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttgtt < 2:224512/149‑1 (MQ=255) cacaATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTggc > 2:306184/1‑148 (MQ=255) cacaATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGAATCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGa > 2:69039/1‑149 (MQ=255) aaTCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGAGTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTGCTGGTGGATgg > 1:159614/1‑149 (MQ=255) gcgcgcgCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACTAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTcc < 2:346957/146‑1 (MQ=255) gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGGTCACCAGTTCGTCCCGTTTCAGTACAACGAGCTTCCCGCTGCGAGTTTCTTGTTGGATGGCGTACTCCGGCAGCCAg < 2:121358/149‑1 (MQ=255) gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAg < 2:121350/149‑1 (MQ=255) aaGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCcaca < 1:83824/149‑1 (MQ=255) ggCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGACTTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGa < 1:123194/149‑1 (MQ=255) gCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAg < 1:81196/149‑1 (MQ=255) aaCGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGCggg > 2:294968/1‑149 (MQ=255) aaCGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAggg > 2:219923/1‑149 (MQ=255) cGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCa > 2:213596/1‑149 (MQ=255) aTGCGGGTACTCCTCCGGTATGCATCGGCCTGAACCGGGATCACCAGTTCGTCCCGATTCAGTAACACGAGCTTCCCGCTGCGAATGTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCtt < 1:412697/149‑1 (MQ=255) ggTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTaaaa < 2:291248/149‑1 (MQ=255) cTGAATCGGGATCACCAGTTCGtcccgattcaggcctatgcataccggatgaatacccgcatgaatcccgttgccgaac < 2:193075‑M2/79‑58 (MQ=255) cTGAATCGGGATCACCAGTTCGtcccgattcaggcctatgcataccggatgaatacccgcatgaatcccgttgccgaac > 1:193075‑M2/1‑22 (MQ=255) cTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGTTAGCTTACTCCGGCAGCCAGGCAATCCAACAGCCGTCGAGAGCAACATGCTTGCAAAGCTAGCTCATCGTAGAGACaaaaa > 1:183726/1‑149 (MQ=255) cTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAGCTCGCTCATCGAAGAGAcaacaa > 2:67146/1‑149 (MQ=255) cTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAGCTCGCTCATCGAAGAGACaaaaa > 1:190276/1‑149 (MQ=255) tGAATCGGGATCACCAGTTCGtcccgattcaggcctatgcataccggatgaatacccgcatgaatcccgttgccgaacgcttctggcgtgaactgcgc < 2:91507‑M2/98‑78 (MQ=255) tGAATCGGGATCACCAGTTCGtcccgattcaggcctatgcataccggatgaatacccgcatgaatcccgttgccgaacgcttctggcgtgaactgcgc > 1:91507‑M2/1‑21 (MQ=255) ggATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCATCCTGCTTTAAAAGCTCGCTCATCGAAGAGACAAAAAAGGTGCTg > 2:312381/1‑149 (MQ=255) cAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGt < 2:352734/89‑1 (MQ=255) cAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGt > 1:352734/1‑89 (MQ=255) | GCAGTGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCGTACTCCGGCAGCCAGGCAATCCCACAGCCGTCGAGGGCAACCTGCTTTAAAAGCTCGCTCATCGAAGAGACAAAAAAGGTGCTG > NC_000913_3_hsa_tpiA/4557339‑4557606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |