New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 357155	39 (1.120)	3 (0.090)	3/264	NT	7.4%	coding (985/1284 nt)	codA	cytosine/isoguanine deaminase
	?	NC_000913_3_hsa_tpiA	= 357165	38 (1.140)					coding (995/1284 nt)	codA	cytosine/isoguanine deaminase

GGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGGCATTGCCGCCGGAAACAGCGCCAACCTGATTATCC  >  NC_000913_3_hsa_tpiA/357023‑357308                                                                                                                                                |                                                                                                                                                 ggACGGTTCGATACGGATCCAAATGGTCGCGGCATCACGCGCGTTAAAGTGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCTCTGGGAACGGCGAATATGCTGCAAGTGCTgcatat                                                                                                                                            >  2:75406‑M2/1‑143 (MQ=255)  gACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCGTTAACGTCTGCTTTGGTCACGATGATGTCTTGGATCCGTGGTATCCGCTGGGAACGGCGAATATGGTGCAAGTGCTGCATATg                                                                                                                                           >  1:619289/1‑149 (MQ=255)   aCGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATgg                                                                                                                                          <  2:423750/149‑1 (MQ=255)    cGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTAGCCACTATTCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATggg                                                                                                                                         <  1:378862/149‑1 (MQ=255)      tttCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGCG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCCAGTCCTGCATATAGGGc                                                                                                                                       >  2:393462/1‑149 (MQ=255)           gtACGTATCGAAGACGCGGCTGAAGTACGCGCGTTAATGAGACGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTTTCCGCTGGGAAAAGCTTTTCGGCTGTAAGTGCTGCATATGGGGCTGCAt                                                                                                                                  <  2:472114/148‑1 (MQ=255)           aTACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCAt                                                                                                                                  >  1:45818/1‑149 (MQ=255)              cGTATCCAAAACGGGGCGGCCTCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGtt                                                                                                                               <  2:391764/149‑1 (MQ=255)               ggagcgaaaaCGGCGTGGCATCCCGGGGGTTCAAGAGACGCTGTAG‑TCCGGCTATAACGTCTGCTTTCGTCACGTGTGTGTCTTTGATCCGTGGTATTCGCTGGGATCGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGttt                                                                                                                              <  2:236633/143‑1 (MQ=255)                tATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTg                                                                                                                             >  1:345947/1‑149 (MQ=255)                  tCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGcc                                                                                                                           >  1:307784/1‑149 (MQ=255)                      aaaCGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGtt                                                                                                                       <  1:190902/149‑1 (MQ=255)                       aaCGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCCTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTg                                                                                                                      >  2:110382/1‑149 (MQ=255)                           tCGCCGCATCACGCGCGTTAAAGAGATCCCGGAGAACCCGGA‑TGACGTCGTCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATgg                                                                                                                  <  1:511328/149‑1 (MQ=255)                                       gcgcgTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGa                                                                                                      >  1:637349/1‑149 (MQ=255)                                         gcgTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATGCGCTGGGAACGGCGACTATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGGTGGGGTACGGGCAGGtt                                                                                                    >  2:364215/1‑149 (MQ=255)                                           gTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTaa                                                                                                  >  1:639155/1‑149 (MQ=255)                                           gTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGCTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCCAATATGCTGCAAGTGCTGCATATGGGGGTGCATGTTTGCCAGTTGATGGGCTACGGGCACAttca                                                                                                  >  1:113276/1‑147 (MQ=255)                                            ttAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAAc                                                                                                 <  1:220305/149‑1 (MQ=255)                                            ttAAAGAGATGCTGGAG‑TCCGGCAGTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAAc                                                                                                 <  1:220233/149‑1 (MQ=255)                                              aaaGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGAAGATGTCTTCGATCCGGGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTTCCCGTTGATGGGCTACGGGCAGATTAAGGa                                                                                               >  1:357580/1‑149 (MQ=255)                                                  agaTGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGc                                                                                           >  1:390905/1‑149 (MQ=255)                                                    aTGCTGGAG‑TCCGACATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCt                                                                                         <  2:537890/149‑1 (MQ=255)                                                     tGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTg                                                                                        >  1:323734/1‑149 (MQ=255)                                                          gAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTgc                                                                                                                                                >  2:505463‑M2/1‑86 (MQ=255)                                                          gAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTgc                                                                                                                                                <  1:505463‑M2/88‑3 (MQ=255)                                                           aG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAATGCTGCATATGGGGCTGCATGTTTGACAGTTGATGAGCTACGGGCAGATTAACGATGGCCTGAAT‑TTa                                                                                 >  1:366178/1‑149 (MQ=255)                                                            g‑TCCGGCAGTAACGTCTGCTTTGGTCACGATTATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTaa                                                                                <  1:302587/149‑1 (MQ=255)                                                                cGGCATTAACGGCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATca                                                                             <  2:361672/149‑1 (MQ=255)                                                                 ggCATTAACGTCTGCTTTGGTCACGATGATGTATTCGATCCGTGGTATCCGCTGGGAACGGCGAATAAGCTGCAAATGCTGCATAGGGGGCTGCATCTTTGCCAGTTGATGGGCTCCGGCACGATTAACGATGTCCTGAAT‑TTAACcac                                                                            >  2:50875/1‑149 (MQ=255)                                                                  gCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTAGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAATTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATcacc                                                                           >  1:415550/1‑149 (MQ=255)                                                                    aTTAACGTCTGCTTTGGTCACGATGATGTCTGCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGTCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATcaccca                                                                         <  1:458036/149‑1 (MQ=255)                                                                                tttGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGCCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAAACATGGCCTTAAT‑TTTAACACCCACCACAGCGCAAg                                                             >  2:72008/1‑149 (MQ=255)                                                                                              tgTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGACTGAATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATCACCCACCACAGCGCAAGGACGTTGAATTTGc                                               >  1:454673/1‑149 (MQ=255)                                                                                              tgTCTTCGATCCGTGGTATCCGCTGAGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATCAGCCCCCAGAGGCCAAGCACGGTGAAtttcc                                               >  2:297090/1‑147 (MQ=255)                                                                                               gTCCTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCa                                              <  1:110382/149‑1 (MQ=255)                                                                                                tCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAg                                             <  1:201140/149‑1 (MQ=255)                                                                                                  ttCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTgcatattcgccgttcccagcggataccacggatcgaagacatcatcgtgaccaaagcagacgttaa                                                                                <  1:451524‑M2/113‑67 (MQ=255)                                                                                                  ttCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTgcatattcgccgttcccagcggataccacggatcgaagacatcatcgtgaccaaagcagacgttaa                                                                                >  2:451524‑M2/1‑47 (MQ=255)                                                                                                     gATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATCACCCACCACAGCGCAAGGACGTCGCATTTGCAGGATTa                                        >  2:597439/1‑149 (MQ=255)                                                                                                           tGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGGCAt                                  <  2:79229/149‑1 (MQ=255)                                                                                                                   gCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACCATGGCCTGAAT‑TTAATCACCACGTGCAGGGCAAGCGCGCTGAATTTCCAGAATTACGACATTGccgccg                          >  2:397646/1‑149 (MQ=255)                                                                                                                       ggAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGGCATTGCCGCCGGaaa                      <  1:96599/149‑1 (MQ=255)                                                                                                                                aaTATGCTGCAAGTGCTgcatattcgccgttcccagcggataccacggatcgaagacatcatcgtgaccaaagaagacgttaatgccggacaccagcatcgctttaacgcgggtgacgcaacaatcttttggatacgtatcgacacacc              <  2:105664‑M2/149‑133 (MQ=255)                                                                                                                                  tatGCTGCAAGTGCTCCACCAAGGCCGGCATGTTTGCCAGTTGATGGGCTACGCGCAGATTAACGATGGCCTGAAT‑TTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGCCCTTGCCGCCGAAAACAGCGCCAAcc           >  2:44512/1‑149 (MQ=255)                                                                                                                                     gctgcAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGGCATTGCCGCCGGAAACAGCGCCAACCTGa        <  1:644050/149‑1 (MQ=255)                                                                                                                                       tgcAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTCAAGACTGCC‑GAGTGTTACTCATAGGCGAGAGAGCAAGGACGCTGAATGTGCAGGATTATGGCATTGCCGCCGGAAACAGCGCCAACCTGAtt      >  1:318158/1‑149 (MQ=255)                                                                                                                                           aGTGCTGCATATGGGGCTGCATGTTGGCCAGGTGATGGGCGACGGGCAGATGAACGATGGCCTGAAT‑TTACTCACCCACCACAGCGCAAGAACGTTGAATTTCCAGGATTACGTCACTCCCGCAGGAAACCGCGCCAACCTGATTAAcc  >  2:320815/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                 GGACGTTTCGATACGTATCCAAAACGTCGCGGCATCACGCGCGTTAAAGAGATGCTGGAG‑TCCGGCATTAACGTCTGCTTTGGTCACGATGATGTCTTCGATCCGTGGTATCCGCTGGGAACGGCGAATATGCTGCAAGTGCTGCATATGGGGCTGCATGTTTGCCAGTTGATGGGCTACGGGCAGATTAACGATGGCCTGAAT‑TTAATCACCCACCACAGCGCAAGGACGTTGAATTTGCAGGATTACGGCATTGCCGCCGGAAACAGCGCCAACCTGATTATCC  >  NC_000913_3_hsa_tpiA/357023‑357308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.