New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	998439 =	90 (0.970)	13 (0.150)	13/244	8.7	13.5%	intergenic (+32/‑51)	elfA/elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
	?	NC_000913_3_hsa_tpiA	998461 =	83 (0.960)					intergenic (+54/‑29)	elfA/elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCAAGTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/998595‑998439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaggggATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGCAGGTAAAGGCGGGATTGGACTTGCAGCAACACGTCTTGT  >  NC_000913_3_hsa_tpiA/998461‑998608                                                                                                                                                                                                                                                                                                                   CTGCAAGTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACT                                                                                                                                                             >  2:1059044/1‑150   GCAAGTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGG                                                                                                                                                           >  2:483240/1‑150    CAAGTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGA                                                                                                                                                          <  4:397484/150‑1     AAGTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACT                                                                                                                                                             >  4:767371/1‑146     AAGTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACT                                                                                                                                                             <  3:767371/146‑1       GTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGCGCAGCTGAGTAATATTGCCGTTCCATTTATGGTGCCAATTTCCTTTGTTATTCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGG                                                                                                                                                       <  1:809934/150‑1        TCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATACCCCCTCCAGAACACTGGAGGGG                                                                                                                                                      <  2:1259662/150‑1                CGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGG                                                                                                                                                      >  2:1236353/1‑142                CGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGG                                                                                                                                                      <  1:1236353/142‑1                        CCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTA                                                                                                                                      >  2:872513/1‑150                                      GGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTA                                                                                                                        <  1:872513/150‑1                                            GCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTG                                                                                                                                                            >  1:926617/1‑108                                            GCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTG                                                                                                                                                            <  2:926617/108‑1                                                                  AAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGT                                                                                            <  1:345896/150‑1                                                                                             ATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGC                                                                          >  4:46913/1‑141                                                                                             ATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGC                                                                          <  3:46913/141‑1                                                                                                          TAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTT                                                                                 <  4:645859/121‑1                                                                                                          TAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTT                                                                                 >  3:645859/1‑121                                                                                                                     TCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGC                                         >  1:1012279/1‑150                                                                                                                          AAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGCAGGTA                                    >  3:538206/1‑150                                                                                                                                      ATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGCAGGTAAAGGCGGGATTG                        <  2:1012279/150‑1                                                                                                                                             CCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGC                                                          <  3:729868/109‑1                                                                                                                                             CCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGC                                                          >  4:729868/1‑109                                                                                                                                              CAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGCAGGTAAAGGCGGGATTGGACTTGCA                <  4:538206/150‑1                                                                                                                                                        GAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCT                                                            <  2:946781/96‑1                                                                                                                                                        GAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCT                                                            >  1:946781/1‑96                                                                                                                                                            GGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGCAGGTAAAGGCGGGATTGGACTTGCAGCAACACGTCTTGT  <  2:1082274/150‑1                                                                                                                                                             GATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGT                                                                                            >  1:179696/1‑59                                                                                                                                                             GATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGT                                                                                            <  2:179696/59‑1                                                                                                                                                                                                                                                                                                                   CTGCAAGTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/998595‑998439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaggggATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGCAGGTAAAGGCGGGATTGGACTTGCAGCAACACGTCTTGT  >  NC_000913_3_hsa_tpiA/998461‑998608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.