New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	4271668 =	32 (1.340)	4 (0.180)	4/272	2.7	13.5%	coding (2186/2823 nt)	uvrA	ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
	?	NC_000913_3_hsa_tpiA	4271755 =	21 (0.930)					coding (2099/2823 nt)	uvrA	ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
Rejected: Frequency below/above cutoff threshold.

TCTCCAGCGTTTCACGGTTATAGCGTTTACCTTTGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAA  >  NC_000913_3_hsa_tpiA/4271522‑4271811                                                                                                                                                   |                                                                                                                                                gacacactgttcccgattgcccaacgccagttgaatggggcgaccatcgccgaaccagcaccgtatcgcgatattcaggggctggagcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaccc                                                                                                                                               >  1:365719‑M1/147‑149 (MQ=255)    acactgttcccgattgcccaacgccagttgaatggggcgaccatcgccgaaccagcaccgtatcgcgatattcaggggctggagcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccccgttctacCCCGGc                                                                                                                                            <  1:409694‑M1/6‑1 (MQ=255)        cGTTTCACGGTTATAGCGTTTACCTTTGCACTGGTCGCACGGCAAGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGtat                                                                                                                                        <  1:289928/149‑1 (MQ=255)              aCGGTTATAGCGTTTACCTTTGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCcgc                                                                                                                                  >  2:181002/1‑149 (MQ=255)                     ccaacgccagttgaatggggcgaccatcgccgaaccagcaccgtatcgcgatattcaggggctggagcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaCCCGGCGTATAGCCGCGCGCACg                                                                                                                           <  1:257819‑M1/23‑1 (MQ=255)                          tttACCTTTGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGAtt                                                                                                                      >  1:85535/1‑149 (MQ=255)                              ccTTTGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTCATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCgg                                                                                                                  <  1:35283/149‑1 (MQ=255)                                tttGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTa                                                                                                                <  2:389589/149‑1 (MQ=255)                                     aCTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGACCGGGATTCCGGTACGccc                                                                                                           >  2:348263/1‑149 (MQ=255)                                              acggcacgTAGATTTCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGt                                                                                                  >  2:376687/1‑149 (MQ=255)                                                          tatCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGc                                                                                      <  1:181002/149‑1 (MQ=255)                                                            tCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACTAACGTTAAAGCTGAAAAGTCCCGGCGTATATCCGCGCGCACTGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGt                                                                                    <  2:363542/149‑1 (MQ=255)                                                              cGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTaa                                                                                  <  1:356900/149‑1 (MQ=255)                                                                gCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAac                                                                                >  2:346402/1‑149 (MQ=255)                                                                    gcagcgtaTCTCCACTTTGATCACGCCATCGCCCTGACATGCCTCGCAGCTTCCGCTGCTAACGTTAAAGCTTAACTATCCCGATGTATATCCGCGCGCACGGGATTCCGGTACGCCCGCTAACAGTTCGCGCACAGGCGTAAACACGc                                                                            <  2:317645/142‑1 (MQ=255)                                                                           aTCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGATCTCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGtata                                                                     >  1:393259/1‑149 (MQ=255)                                                                            tctcCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAg                                                                    >  2:332282/1‑149 (MQ=255)                                                                            tctcCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCATTCCTTTTGCGCTCACAGGCGTAAACACGCCGGTATAg                                                                    <  1:207764/149‑1 (MQ=255)                                                                              tcCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCAGGTATAGGt                                                                  >  1:113984/1‑149 (MQ=255)                                                                              ggggctggagcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGt                                                                  <  1:346913‑M1/80‑1 (MQ=255)                                                                                  cTTTGATCACGCCATCGCCCCGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCCCACAGGCGTAAACACGCCGGTATAGGTCGcc                                                              >  2:260232/1‑149 (MQ=255)                                                                                   cttGATCACGCCATCGCCCTTACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCg                                                             <  1:260997/148‑1 (MQ=255)                                                                                      gATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGt                                                          <  1:332282/149‑1 (MQ=255)                                                                                      agcatttcgataaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGt                                                          >  2:257819‑M1/62‑149 (MQ=255)                                                                                              cATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCATAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGt                                                  >  1:32695/1‑149 (MQ=255)                                                                                               agcGCTCTGACGGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTg                                                 <  2:11901/147‑1 (MQ=255)                                                                                                tCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAAGGTgg                                                >  1:336003/1‑149 (MQ=255)                                                                                                tCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTgg                                                <  1:346402/149‑1 (MQ=255)                                                                                                 cGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGa                                               <  2:384378/149‑1 (MQ=255)                                                                                                 aaagtgatcgatatcgaccaaagcccaattggtcgtactccacgttctaaCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGa                                               >  2:346913‑M1/51‑149 (MQ=255)                                                                                                  gCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAg                                              <  1:35094/149‑1 (MQ=255)                                                                                                   cccTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGt                                             >  2:310288/1‑149 (MQ=255)                                                                                                   cccTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGt                                             >  2:336608/1‑149 (MQ=255)                                                                                                            gCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAAt                                    <  1:136354/149‑1 (MQ=255)                                                                                                                                      aaaGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGCTCCCtc          >  1:90165/1‑148 (MQ=255)                                                                                                                                         gCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTAt       <  1:159644/149‑1 (MQ=255)                                                                                                                                          cTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATc      <  2:304680/149‑1 (MQ=255)                                                                                                                                              aaCGTCCCGGCGTATAGCCGCGCGCACGGCATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGaaa  <  1:174632/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                TCTCCAGCGTTTCACGGTTATAGCGTTTACCTTTGCACTGGTCGCACGGCACGTAGATATCCGGCAGGAAGTGCATCTCCACTTTGATCACGCCATCGCCCTGACAGGCCTCGCAGCGTCCGCCACGAACGTTAAAGCTGAAACGTCCCGGCGTATAGCCGCGCGCACGGGATTCCGGTACGCCCGCAAACAGTTCGCGCACAGGCGTAAACACGCCGGTATAGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAA  >  NC_000913_3_hsa_tpiA/4271522‑4271811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.