New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 2700568128 (0.800)15 (0.110) 15/230 14.7 12.3% noncoding (49/77 nt) ohsC sRNA antisense regulator of shoB toxin
?NC_000913_3_hsa_tpiA = 2700581 105 (0.770)noncoding (62/77 nt) ohsC sRNA antisense regulator of shoB toxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATTGGCGGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/2700401‑2700568
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaaaagtaaaacccccgAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAAGAAAGCAA  <  NC_000913_3_hsa_tpiA/2700581‑2700433
                                                                                                                                                                                                                                                                                                                             
AATTGGCGGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGT                                                                                                                                                                         >  2:443263/1‑150
 ATTGGCGGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTT                                                                                                                                                                        >  4:1106213/1‑150
 ATTGGCGGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTT                                                                                                                                                                        >  2:1233432/1‑150
     GCGGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAA                                                                                                                                                                    >  1:1152880/1‑150
     GCGGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTACATGCTGCACAAAATTAAAGTTAAAA                                                                                                                                                                    >  1:1162674/1‑150
      CGGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAA                                                                                                                                                                   <  1:1386167/150‑1
      CGGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAA                                                                                                                                                                   <  2:1256776/150‑1
       GGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAG                                                                                                                                                                  >  2:128332/1‑150
        GTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGT                                                                                                                                                                 >  1:1147179/1‑150
        GTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGT                                                                                                                                                                 <  3:1119948/150‑1
             GTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAAC                                                                                                                                                            >  4:816758/1‑150
             GTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAAC                                                                                                                                                            >  4:1049601/1‑150
             GTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGT                                                                                                                                                                 >  1:877329/1‑145
             GTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGT                                                                                                                                                                 <  2:877329/145‑1
              TTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACC                                                                                                                                                           <  2:1125253/150‑1
              TTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACC                                                                                                                                                           >  4:405294/1‑150
                  TCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCG                                                                                                                                                       >  4:830343/1‑150
                                      TCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGT                                                                                                                                   <  1:176865/150‑1
                                                   TCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAA                                                                                                                                                                    >  4:44816/1‑104
                                                   TCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAA                                                                                                                                                                    <  3:44816/104‑1
                                                    CGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACT                                                                                                                     <  3:823238/150‑1
                                                       GTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTA                                                                                                                  <  4:192353/150‑1
                                                               GCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAATCCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTG                                                                                                          <  4:1121838/150‑1
                                                                 TAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTT                                                                                                                         >  1:517669/1‑133
                                                                 TAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTT                                                                                                                         <  2:517669/133‑1
                                                                                  TTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAGAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAA                                                                                       <  1:658512/150‑1
                                                                                     TAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAG                                                                                    >  1:1239077/1‑150
                                                                                            TAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTAT                                                                             <  1:1207008/150‑1
                                                                                             AAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCC                                                                                                                                                         >  4:765072/1‑73
                                                                                             AAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCC                                                                                                                                                         <  3:765072/73‑1
                                                                                               GTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGA                                                                          <  2:1239077/150‑1
                                                                                               GTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAA                                                                                                                       <  4:1029792/105‑1
                                                                                               GTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAA                                                                                                                       >  3:1029792/1‑105
                                                                                                   ACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGG                                                                                                                                     <  1:1645375/87‑1
                                                                                                   ACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGG                                                                                                                                     >  2:1645375/1‑87
                                                                                                    CTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGT                                                                     <  2:414665/150‑1
                                                                                                                                                        AAAAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCT                 >  2:1147179/1‑150
                                                                                                                                                          AAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTT               >  2:1785092/1‑150
                                                                                                                                                          AAGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTCTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTT               >  1:386600/1‑150
                                                                                                                                                           AGTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTA              <  2:961391/150‑1
                                                                                                                                                            GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTAC             <  3:443056/150‑1
                                                                                                                                                            GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTAC             >  2:291054/1‑150
                                                                                                                                                            GTAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTAC             <  4:581992/150‑1
                                                                                                                                                             TAAAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACG            >  3:550649/1‑150
                                                                                                                                                               AAACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAA          <  3:1050230/150‑1
                                                                                                                                                                AACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAAG         <  1:101825/150‑1
                                                                                                                                                                AACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAA                                         <  1:461738/118‑1
                                                                                                                                                                AACCCCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAA                                         >  2:461738/1‑118
                                                                                                                                                                    CCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAAGAAAG     <  2:1660833/150‑1
                                                                                                                                                                    CCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAAGAAAG     <  1:64342/150‑1
                                                                                                                                                                    CCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAAC                                                                                         >  4:397546/1‑66
                                                                                                                                                                    CCCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAAC                                                                                         <  3:397546/66‑1
                                                                                                                                                                     CCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGC                                                                                   >  4:738855/1‑71
                                                                                                                                                                     CCGAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGC                                                                                   <  3:738855/71‑1
                                                                                                                                                                       GAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAAGAAAGCAA  <  2:1559483/150‑1
                                                                                                                                                                                                                                                                                                                             
AATTGGCGGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/2700401‑2700568
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaaaagtaaaacccccgAACTGGTAAGGAACGGGGGTTTTACTTTTTAACTTTAATTTTGTGCAGCATGCACCCTCAACAACAGCGATTATGGATCAGTGTACTTATCTTTTACAAGCAACTTGCAATCTTTAGCATAAAAACTCGAGCCTTTACGAAGAAAGCAA  <  NC_000913_3_hsa_tpiA/2700581‑2700433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.