| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 1207805 | 19 (0.520) | 14 (0.440) | 14/244 | NT | 43.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | = 1209602 | 20 (0.620) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAA > NC_000913_3_hsa_tpiA/1207664‑1207948 | gTGCAAGTCCGGCGAAGGGGCGGCACGAGCAGGTACTTACCGCACTTCCCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa < 1:519502/149‑1 (MQ=17)attacgttgtagatctgtggtctggtcatttgttgatacgggtacatagtcaataagcatgttaaatccccctggtaaaaggcggaatgatgccatttgcttgttatttcttctttttccttaatgTTGGTTTGGGAGAAGGAGCaaaa > 1:336859‑M1/127‑149 (MQ=255) cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac < 1:165743‑M1/149‑12 (MQ=255) gttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa < 1:644007‑M1/28‑1 (MQ=255) cTGGAGAATGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCACAAGAATCAGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGACGGAGCAAAAATCAATgc > 2:247406/1‑149 (MQ=18) cTGGAGAAGGGGCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCGGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgc < 2:486105/149‑1 (MQ=255) tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 2:433942‑M1/149‑17 (MQ=255) gaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTCAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:151862/149‑1 (MQ=255) gaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:151866/149‑1 (MQ=255) ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcc < 1:466447‑M1/149‑24 (MQ=255) tgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc > 1:515909‑M1/110‑149 (MQ=255) ttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttctttattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCGACGGCTa < 1:57845‑M1/42‑1 (MQ=255) ctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGTGCAAAACTCAATGCAGCAACGGCTACa < 2:464341‑M1/44‑1 (MQ=255) gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCGGTTAAGCCGCAAGAATCCGTTTGGCGATATCACATCGGATGGCACTGTGCACACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctcggcattacctgtcggtgtcccggttc > 2:603688‑M1/1‑120 (MQ=255) cACGACTAGTTACTGACCGCACTTCGCGCGCTGCTGTTAAGCCTCAAGAATCCGTTTGGTGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc < 2:36474‑M1/149‑31 (MQ=255) gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa > 2:479879‑M1/103‑149 (MQ=255) cggcgaGTTACTTTCGGCATTGCGCGCGCTGTTGTTAAGCAGCAAGGATCGGTTTGGGGATATGAACTCGGATGGCACTGTGCAAACGGCTCTCGAAAAGCTTCGTTTGGGAGAAGGAGGAAAACTCAATGCTGTAACGGCTACATTAg < 2:623319/144‑1 (MQ=255) cGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCCCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:194898/149‑1 (MQ=255) gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAGATCGGATGGACCTGTGCAAACGGCTCCCGAAAACCTTGGTTTGGGAGAAAGctctgcattacctgttggtgtcccggttcgttg > 2:20707‑M1/1‑116 (MQ=255) tttgttgagacgcgtacatagtcaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGctaaattcagaa > 2:602860‑M1/99‑144 (MQ=255) ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCGACGGCTACATTAGGACGCAc > 1:367686/1‑149 (MQ=255) tacgtacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAAGCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 2:249220‑M1/149‑41 (MQ=255) tacgcctacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt > 1:590455‑M1/91‑149 (MQ=255) cccgtacatagccaataagcattttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:223752‑M1/89‑149 (MQ=255) gcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc < 1:415908‑M1/62‑1 (MQ=255) agccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtat < 1:630183‑M1/70‑1 (MQ=255) caataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc < 1:348668‑M1/73‑1 (MQ=255) gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggct > 1:662979‑M1/1‑90 (MQ=255) cgggctgttaAGCCGAAAGAGTGCGTGTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggct < 2:515287‑M1/146‑60 (MQ=255) agcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa > 2:286322‑M1/72‑149 (MQ=255) tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCACAACTCAATGCAGCAACGGCTACACTAGGACGCACCGGTTTCATAGCTATCCCGGTTATGAt < 2:224969‑M1/82‑1 (MQ=255) tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt > 1:494677/1‑149 (MQ=255) tAAGCAGCAAAAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt < 2:380932/149‑1 (MQ=255) gaagCCGGAAGGATCCGTTTGGCGATATCAAATCGGTTGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatgacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa < 2:568114‑M1/148‑68 (MQ=255) aagtccccctggaaacaggaagaatgatgccatttgcctgttatttctccactttcataaacgTTGGTTTGGGAGAAGGAGCCAAACTTAACGAAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGATATGATtggt > 2:402008‑M1/64‑149 (MQ=255) ccgtgcgaaaagcaggaatgttgccattttcttgttattttctcattgtcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCCATGCAGCGTCGGCTACATTAGGACGGCCCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt > 2:432423‑M1/58‑149 (MQ=255) ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt < 1:469562‑M1/92‑1 (MQ=255) ctggtaaaagcatgaatgatgccttttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa > 2:686459‑M1/56‑149 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa > 1:481801‑M1/56‑149 (MQ=255) tggtaaaagcaggaatgatgctaattgcttgttatctcttccattccataaacaTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAttgcg > 1:501987‑M1/55‑147 (MQ=255) tgcagatatCAAAGTGCATGGCACGGTGAAAACGACTCTCGAAGACCTTGGTTTGGGAGAAGGctcggcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcttttt < 2:366531‑M1/145‑87 (MQ=255) agaaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGATTGGGCGACGGAGCAAAACTCAATGCAGCAACGGCTACATTGGGACGCACCGGTTTCATAACTATACCGGTTATGATTGGTGGTATtaagcagtcct < 2:676829‑M1/102‑6 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATCGACGCTGTATTGATGATTGGTGGTATTGAGCAATCAGTa < 1:510937/149‑1 (MQ=37) ggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAAt > 2:665206‑M1/44‑149 (MQ=255) ggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAAt < 1:395218‑M1/106‑1 (MQ=255) atctCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATc < 1:55129/146‑1 (MQ=255) aaaTCGGATGGCACTGTGCACACGGCTCTCGAAAACCTTGGTGTGGGACAACGAGCACAACTCAATGCAACAACGGCAACATTCGGACGCACACGCTTCACAGCCATACCGGTCCAGATTGGTGGTATCGAGCACTCAATAATCCTTcc > 2:219314/1‑148 (MQ=255) tttgcttgttatttcatcattttcataaacgTGCGTTGGGTCGGTGGTGGATGACGCACTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg > 2:661551‑M1/32‑149 (MQ=255) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggggg > 1:556667/1‑149 (MQ=255) ggCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTg < 1:58143/149‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAACACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACTCACCGGTTTCATAGCTATAGCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa < 1:94844/149‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatccccggaact > 1:303611‑M1/1‑41 (MQ=255) gttatttcttcagtttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGGAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAAt > 2:656656‑M1/25‑149 (MQ=255) tgggcaaACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatcacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactgg < 1:113628‑M1/146‑111 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaa < 1:656558‑M1/133‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCt > 2:447541/1‑149 (MQ=255) cGAAAATCTTGGTTTGGGAGAAGGctctggattacctggtggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccga < 2:278420‑M1/149‑126 (MQ=255) aaggtggtgTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttcttcagaagaatacacggaactggcaaaggcttatccgacaaat > 2:563594‑M1/5‑19 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGCATACCGCAAAATCATCTGCCTCTgg > 2:306595/1‑149 (MQ=255) cTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg < 1:247761/149‑1 (MQ=255) TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAGAGCTATACCGGTTATGATTCGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggggg < 2:519792‑M1/149‑1 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGAt > 1:353072‑M1/1‑149 (MQ=255) TGGGAGAAGGAGAAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGAt > 2:277152‑M1/1‑149 (MQ=255) agaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctcaagcatacccgcagccggcaaaggcttatccgacaaataaatttcctgatt > 2:183658‑M1/1‑6 (MQ=255) | GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAA > NC_000913_3_hsa_tpiA/1207664‑1207948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |