| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 3767207 = | 29 (0.800) | 3 (0.080) | 3/268 | NT | 9.2% | intergenic (+28/‑14) | yibA/rhsJ | putative immunity protein for polymorphic toxin RhsA; HEAT‑domain protein; lethality reduction protein/Rhs‑family protein |
| ? | NC_000913_3_hsa_tpiA | 3767245 = | 31 (0.880) | pseudogene (25/945 nt) | rhsJ | Rhs‑family protein | |||||
CATTGAAGCTGCGGGTGAATTAGGTGATAAAACGCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTA > NC_000913_3_hsa_tpiA/3767059‑3767345 | ggccgcgatggtcccagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactt > 1:408213‑M1/149‑149 (MQ=255) ttGAAGCTGCGGGTGAATTAGGTGATAAAACGCTACTTGCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAACTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTc > 2:606244/1‑149 (MQ=255) ttGAAGCTGCGGGTGAATTAGGTGATAAAACGCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAATTCCCTATGCAGCGTGGGGGGTTc > 2:351342/1‑149 (MQ=255) cGGGTGAATTAGGTGAGAAAGCGCTACTTCGTGTTTGAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATCACTTCGGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCa < 2:65046/149‑1 (MQ=255) cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccccggtcaggccgcacgatgcgacccagcggcggctttcctccctcacccggtcagccaggatttcagtTTCccgccggtcggg < 2:408698‑M1/15‑6 (MQ=255) aaTTAGGTGATAAACCGCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGc < 1:686735/149‑1 (MQ=255) ttAGGTGATAAAACGCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGAAAAGTAGGGGATTCCCGCCGGCACGGTGCAg > 1:234511/1‑149 (MQ=255) aaCGCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCg > 1:369065/1‑149 (MQ=255) aTGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAc > 2:470309/1‑149 (MQ=255) tACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCCGACCGGgtg > 2:450341/1‑149 (MQ=255) aCAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtga < 2:20741/149‑1 (MQ=255) aaGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCgggtgggt > 1:427658/1‑149 (MQ=255) tttGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGtgagtgag < 1:199946/149‑1 (MQ=255) atgaCAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa < 1:459897/149‑1 (MQ=255) atgaCAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGCCAAATTTCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa < 1:269804/149‑1 (MQ=37) tctgctccacggtcaggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGaaa < 2:110835‑M1/39‑1 (MQ=255) tctgctccacggtcaggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGaaa > 1:110835‑M1/77‑115 (MQ=255) aaTGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGAAAAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTTGCTGAGCGGGTGAGTGAAGAAAggcgc > 1:402444/1‑149 (MQ=37) aaTTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCGTATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCgctg < 1:363364/149‑1 (MQ=255) aatataACGTCCGCGAGTGATAAGCTTAAGCGTTCATGGGGTGAGTTTCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGTAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGTCgctgg < 2:165283/147‑1 (MQ=21) aTTATAACTTCCGCTATTGATAAGATGAAGCGTTCATAGGATGAGTTGCCTGTGCACAGTGGGGGGTTCGCGCAGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGCCTGACCGGAGGAGTGAGGGACGCCGCCgcagg > 2:538151/1‑149 (MQ=25) tataACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACAGGGTGAGTGAGGAAAGCCGCcgctcgct > 2:673257/1‑149 (MQ=255) tataACCTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCgctggct < 2:621521/149‑1 (MQ=255) ataACTTCCGCCATTGATAAGCTCAAGCGTTCATACCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCgctggctg < 1:170187/149‑1 (MQ=255) gCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAACCGCCGCTGGCTGGCATCGTGc > 1:139160/1‑149 (MQ=255) aTTGTTAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGGCGGCACGGGGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGc < 2:619510/149‑1 (MQ=255) tcaGCTGAAGCGTTCATAGCATGAGTTGCATATGCACAGTGGGGGATTCCCGCCGCCACGGTGCGGATGCTCGACCGGCTGGAAAGTGAACTCCTGGCTGACAGCGAGAGTGTGAAAAGCCGCCCCTGGCTGGCATCGTGCGGccctcc > 2:399058/3‑145 (MQ=21) ttCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGCCCGGGCGAGTGAGGAAAGCCGCCGCTGGCTGGCACCGTGCGGCCTGACCGTGGAGCAggt > 2:505461/1‑147 (MQ=255) gCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGaaaaa < 1:660188/149‑1 (MQ=255) gCGTGAGTTGCCTATGCACAGTGGAGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAATGAGGAACACGGGCGCGGACTGGCATCGTGCGACCTGACCGAGGAGCAGATGaaaaa > 1:54220/1‑149 (MQ=18) gaattGCCAATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAg < 1:111175/146‑1 (MQ=255) gCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGa < 1:377125/149‑1 (MQ=255) tATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGCCGGGCTGGGAATTGAAATCCTGGCTGCCCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGAccc > 2:175213/1‑149 (MQ=17) gCACAGTGGGGGATTCGCGGCGGCACGGTGCAGAGGCACGACCGGCTGGAAAGTGGAATCCTGGCTGACCGGGTGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCTGCCTGACAGTGGAGCAGATGCAAACCCAGATGGACCCGgt < 2:17536/149‑1 (MQ=14) caGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTa > 1:508820/1‑149 (MQ=255) | CATTGAAGCTGCGGGTGAATTAGGTGATAAAACGCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTA > NC_000913_3_hsa_tpiA/3767059‑3767345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |