mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 22.2% | 323.9 / 83.2 | 162 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 247 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 3953431 | 93 (0.910) | 14 (0.150) | 14/246 | 8.2 | 13.9% | intergenic (+18/‑47) | ilvE/ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| ? | NC_000913_3_hsa_tpiA | = 3953437 | 88 (0.940) | intergenic (+24/‑41) | ilvE/ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4297174 | 104 (1.020) | 15 (0.160) | 14/250 | 8.4 | 13.0% | intergenic (‑67/+27) | yjcO/fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| ? | NC_000913_3_hsa_tpiA | = 4297178 | 103 (1.080) | intergenic (‑71/+23) | yjcO/fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3089696 | 95 (0.930) | 15 (0.160) | 14/250 | 8.4 | 14.6% | intergenic (+18/‑59) | galP/yggI | D‑galactose transporter/Zn‑dependent metalloprotease‑related protein |
| ? | NC_000913_3_hsa_tpiA | = 3089702 | 87 (0.910) | intergenic (+24/‑53) | galP/yggI | D‑galactose transporter/Zn‑dependent metalloprotease‑related protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2708671 | 72 (0.700) | 15 (0.150) | 14/254 | 8.5 | 18.3% | coding (84/957 nt) | rseB | anti‑sigma E factor, binds RseA |
| ? | NC_000913_3_hsa_tpiA | = 2708691 | 66 (0.680) | coding (64/957 nt) | rseB | anti‑sigma E factor, binds RseA | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3214941 = | NA (NA) | 15 (0.160) | 13/248 | 8.7 | 14.1% | intergenic (+53/+26) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| ? | NC_000913_3_hsa_tpiA | 3214966 = | 91 (0.960) | intergenic (+78/+1) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3426803 | NA (NA) | 16 (0.230) +41 bp |
7/186 | 9.1 | 14.1% | intergenic (‑20/+155) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913_3_hsa_tpiA | 4168544 = | 140 (1.370) | intergenic (+115/‑79) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3079604 = | 116 (1.140) | 15 (0.160) | 11/246 | 9.4 | 12.3% | intergenic (‑274/+40) | cmtB/tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| ? | NC_000913_3_hsa_tpiA | 3079630 = | 108 (1.150) | intergenic (‑300/+14) | cmtB/tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1672798 | 88 (0.860) | 11 (0.120) | 11/248 | 9.5 | 11.9% | intergenic (+17/+22) | ydgD/mdtI | putative peptidase/multidrug efflux system transporter |
| ? | NC_000913_3_hsa_tpiA | = 1672804 | 82 (0.870) | intergenic (+23/+16) | ydgD/mdtI | putative peptidase/multidrug efflux system transporter | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4168379 = | 54 (0.530) | 14 (0.140) | 12/268 | 9.7 | 20.6% | noncoding (26/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913_3_hsa_tpiA | 4209802 = | NA (NA) | noncoding (47/76 nt) | gltV | tRNA‑Glu | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4168379 = | 54 (0.530) | 13 (0.130) | 12/268 | 9.7 | 16.7% | noncoding (26/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913_3_hsa_tpiA | 4168400 = | 76 (0.740) | noncoding (47/76 nt) | gltT | tRNA‑Glu | |||||