New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1299498	0 (0.000)	41 (0.950)	34/266	NT	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913_3_hsa_tpiA	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

ACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTC  >  NC_000913_3_hsa_tpiA/1299361‑1299643                                                                                                                                          |                                                                                                                                                  ccaGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                                                                                                        <  1:314189‑M1/148‑12 (MQ=255)              tggaTTTCTTTAATTGCTTCTCTTCACCATCATGTTATTTTCGCAACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattatt                                                                                                                           <  2:136494‑M1/148‑25 (MQ=255)              aGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattatt                                                                                                                           <  1:91322‑M1/149‑25 (MQ=255)               ggATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTACACTGCCTTTGTTAAAGGAAAGTGCTAAataataatcaattgttaaattattt                                                                                                                          >  2:61790‑M1/1‑124 (MQ=255)                gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                                                                                                         <  1:520141‑M1/149‑27 (MQ=255)                gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCAAATCATAATCCTGTGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGATGAAAGTGCTAAataataatcaattgttaaattattgt                                                                                                                         <  2:81736‑M1/149‑27 (MQ=255)                 atctcctTAACTGCTTCCCCTCCCCATCATGTTATTCTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCCTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                                                                                                                        <  1:287802‑M1/146‑28 (MQ=255)                 aTTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                                                                                                                        >  1:246837‑M1/1‑122 (MQ=255)                  tttCCCTAACTGCTTCTCCGCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgc                                                                                                                       <  2:782113‑M1/149‑29 (MQ=255)                      cTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCATATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattt                                                                                                                   >  2:740043‑M1/1‑117 (MQ=255)                       ttAACTGCTTCTGCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAATTGATATTATTACTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcatttgttaaattattgtgcatttc                                                                                                                  >  2:838573‑M1/1‑116 (MQ=255)                         aaCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcac                                                                                                                <  1:649156‑M1/149‑36 (MQ=255)                               ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGGATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgg                                                                                                          <  2:634921‑M1/149‑42 (MQ=255)                                 ctcgtcACCTTCATGTTATTTTCGCCAGATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                        <  2:409804‑M1/149‑44 (MQ=255)                                    ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGCTATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactg                                                                                                     >  2:793075‑M1/1‑103 (MQ=255)                                       aCCATCATGGTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCATTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtccattacactactggaactgtaa                                                                                                  >  2:820458‑M1/1‑100 (MQ=255)                                              tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatgtcactactggaactgtaatctgaaa                                                                                           >  2:497559‑M1/1‑93 (MQ=255)                                               gTTATTTTCGCCACAGCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                          <  2:38907‑M1/149‑58 (MQ=255)                                               gTTAGTTGCGCCACATCATAATCCTGGGCTGGGTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                          <  2:289077‑M1/149‑58 (MQ=255)                                                       cGCCACATCATAATCCTTGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactttaactgtaatcagaaaagatagaca                                                                                  <  1:834326‑M1/149‑66 (MQ=255)                                                         ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagacaaggtagacctg                                                                                >  2:297618‑M1/1‑82 (MQ=255)                                                              tcacAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttag                                                                           <  1:654844‑M1/149‑73 (MQ=255)                                                                      cTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctc                                                                   >  1:348173‑M1/1‑69 (MQ=255)                                                                             tGCTGAAGTATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTTCTAAgtaataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttga                                                            <  2:745839‑M1/149‑88 (MQ=255)                                                                              gCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgat                                                           <  1:756296‑M1/149‑89 (MQ=255)                                                                                    gaaTAATTGAAAGCATATTATTAATTCCTCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaatgatagacatgcttagccaatctctatttgattgaatt                                                     <  1:27482‑M1/149‑95 (MQ=255)                                                                                        aatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                                 >  2:35023‑M1/1‑51 (MQ=255)                                                                                             aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgt                                            <  1:27907‑M1/149‑104 (MQ=255)                                                                                             aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTACTAAataatacttaaatgttatattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatccctatttgattgaatcgaaagatat                                            >  2:95730‑M1/1‑46 (MQ=255)                                                                                               aTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                          <  1:614038‑M1/149‑106 (MQ=255)                                                                                               aTGATATTATTAATTCCACTGCCTTTGGTAGAAGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                          <  1:19335‑M1/149‑106 (MQ=255)                                                                                                 gATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttacccaatctctatttgattgaattgacacttgtttgt                                        >  2:748002‑M1/1‑42 (MQ=255)                                                                                                    attattAATTCCACTGCGTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggatctgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttggttaa                                     <  2:217997‑M1/149‑111 (MQ=255)                                                                                                    attattAATTACACTGCCTTTGGTATAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagctcgagctgcttagccaatctctatttgattgaattgaaagatgtttgttaa                                     <  2:771416‑M1/149‑111 (MQ=255)                                                                                                     ttattaAATCCACTGCCTTTGGTAGAGGAAAGTTCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                                    <  2:717143‑M1/149‑112 (MQ=255)                                                                                                        ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggca                                 >  1:771568‑M1/1‑35 (MQ=255)                                                                                                         taATTCCACTGCCTTTGGTAGAGGAAAGTGTTAAataataatgaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcat                                <  2:722134‑M1/149‑116 (MQ=255)                                                                                                         taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagatatgctttgccaatctctatttgattgtatttaaatatgttggtttaggcat                                <  2:433108‑M1/149‑116 (MQ=255)                                                                                                         taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcat                                <  2:348173‑M1/149‑116 (MQ=255)                                                                                                                     ctgtggtAGAGGAAAGTGCTAAataataatcaatcggtaaattattgtggatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagcta                    <  2:381681‑M1/146‑128 (MQ=255)                                                                                                                           tAGAAGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagatt              <  2:261192‑M1/149‑134 (MQ=255)                                                                                                                                     tGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagaggtttgttaaggcatggatgcaagctatagatttttatacggt    >  2:90218‑M1/1‑6 (MQ=255)                                                                                                                                       cTAAataataatcaattgttaaattattgtgcatttcactactggaactgtcaccagacaagttagacaagcttagccaatctctatttgattgaattgaaagatgtttgttaaagcattgatgcaaactataaattctgatacggtaa  >  2:726594‑M1/1‑4 (MQ=255)                                                                                                                                       cTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtca  >  1:442013‑M1/1‑4 (MQ=255)                                                                                                                                          |                                                                                                                                                  ACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTC  >  NC_000913_3_hsa_tpiA/1299361‑1299643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.