New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 12994980 (0.000)41 (0.950) 34/266 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913_3_hsa_tpiA 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

ACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTC  >  NC_000913_3_hsa_tpiA/1299361‑1299643
                                                                                                                                         |                                                                                                                                                 
ccaGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                                                                                                        <  1:314189‑M1/148‑12 (MQ=255)
             tggaTTTCTTTAATTGCTTCTCTTCACCATCATGTTATTTTCGCAACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattatt                                                                                                                           <  2:136494‑M1/148‑25 (MQ=255)
             aGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattatt                                                                                                                           <  1:91322‑M1/149‑25 (MQ=255)
              ggATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTACACTGCCTTTGTTAAAGGAAAGTGCTAAataataatcaattgttaaattattt                                                                                                                          >  2:61790‑M1/1‑124 (MQ=255)
               gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                                                                                                         <  1:520141‑M1/149‑27 (MQ=255)
               gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCAAATCATAATCCTGTGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGATGAAAGTGCTAAataataatcaattgttaaattattgt                                                                                                                         <  2:81736‑M1/149‑27 (MQ=255)
                atctcctTAACTGCTTCCCCTCCCCATCATGTTATTCTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCCTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                                                                                                                        <  1:287802‑M1/146‑28 (MQ=255)
                aTTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                                                                                                                        >  1:246837‑M1/1‑122 (MQ=255)
                 tttCCCTAACTGCTTCTCCGCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgc                                                                                                                       <  2:782113‑M1/149‑29 (MQ=255)
                     cTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCATATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattt                                                                                                                   >  2:740043‑M1/1‑117 (MQ=255)
                      ttAACTGCTTCTGCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAATTGATATTATTACTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcatttgttaaattattgtgcatttc                                                                                                                  >  2:838573‑M1/1‑116 (MQ=255)
                        aaCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcac                                                                                                                <  1:649156‑M1/149‑36 (MQ=255)
                              ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGGATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgg                                                                                                          <  2:634921‑M1/149‑42 (MQ=255)
                                ctcgtcACCTTCATGTTATTTTCGCCAGATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                        <  2:409804‑M1/149‑44 (MQ=255)
                                   ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGCTATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactg                                                                                                     >  2:793075‑M1/1‑103 (MQ=255)
                                      aCCATCATGGTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCATTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtccattacactactggaactgtaa                                                                                                  >  2:820458‑M1/1‑100 (MQ=255)
                                             tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatgtcactactggaactgtaatctgaaa                                                                                           >  2:497559‑M1/1‑93 (MQ=255)
                                              gTTATTTTCGCCACAGCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                          <  2:38907‑M1/149‑58 (MQ=255)
                                              gTTAGTTGCGCCACATCATAATCCTGGGCTGGGTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                          <  2:289077‑M1/149‑58 (MQ=255)
                                                      cGCCACATCATAATCCTTGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactttaactgtaatcagaaaagatagaca                                                                                  <  1:834326‑M1/149‑66 (MQ=255)
                                                        ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagacaaggtagacctg                                                                                >  2:297618‑M1/1‑82 (MQ=255)
                                                             tcacAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttag                                                                           <  1:654844‑M1/149‑73 (MQ=255)
                                                                     cTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctc                                                                   >  1:348173‑M1/1‑69 (MQ=255)
                                                                            tGCTGAAGTATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTTCTAAgtaataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttga                                                            <  2:745839‑M1/149‑88 (MQ=255)
                                                                             gCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgat                                                           <  1:756296‑M1/149‑89 (MQ=255)
                                                                                   gaaTAATTGAAAGCATATTATTAATTCCTCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaatgatagacatgcttagccaatctctatttgattgaatt                                                     <  1:27482‑M1/149‑95 (MQ=255)
                                                                                       aatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                                 >  2:35023‑M1/1‑51 (MQ=255)
                                                                                            aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgt                                            <  1:27907‑M1/149‑104 (MQ=255)
                                                                                            aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTACTAAataatacttaaatgttatattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatccctatttgattgaatcgaaagatat                                            >  2:95730‑M1/1‑46 (MQ=255)
                                                                                              aTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                          <  1:614038‑M1/149‑106 (MQ=255)
                                                                                              aTGATATTATTAATTCCACTGCCTTTGGTAGAAGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                          <  1:19335‑M1/149‑106 (MQ=255)
                                                                                                gATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttacccaatctctatttgattgaattgacacttgtttgt                                        >  2:748002‑M1/1‑42 (MQ=255)
                                                                                                   attattAATTCCACTGCGTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggatctgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttggttaa                                     <  2:217997‑M1/149‑111 (MQ=255)
                                                                                                   attattAATTACACTGCCTTTGGTATAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagctcgagctgcttagccaatctctatttgattgaattgaaagatgtttgttaa                                     <  2:771416‑M1/149‑111 (MQ=255)
                                                                                                    ttattaAATCCACTGCCTTTGGTAGAGGAAAGTTCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                                    <  2:717143‑M1/149‑112 (MQ=255)
                                                                                                       ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggca                                 >  1:771568‑M1/1‑35 (MQ=255)
                                                                                                        taATTCCACTGCCTTTGGTAGAGGAAAGTGTTAAataataatgaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcat                                <  2:722134‑M1/149‑116 (MQ=255)
                                                                                                        taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagatatgctttgccaatctctatttgattgtatttaaatatgttggtttaggcat                                <  2:433108‑M1/149‑116 (MQ=255)
                                                                                                        taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcat                                <  2:348173‑M1/149‑116 (MQ=255)
                                                                                                                    ctgtggtAGAGGAAAGTGCTAAataataatcaatcggtaaattattgtggatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagcta                    <  2:381681‑M1/146‑128 (MQ=255)
                                                                                                                          tAGAAGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagatt              <  2:261192‑M1/149‑134 (MQ=255)
                                                                                                                                    tGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagaggtttgttaaggcatggatgcaagctatagatttttatacggt    >  2:90218‑M1/1‑6 (MQ=255)
                                                                                                                                      cTAAataataatcaattgttaaattattgtgcatttcactactggaactgtcaccagacaagttagacaagcttagccaatctctatttgattgaattgaaagatgtttgttaaagcattgatgcaaactataaattctgatacggtaa  >  2:726594‑M1/1‑4 (MQ=255)
                                                                                                                                      cTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtca  >  1:442013‑M1/1‑4 (MQ=255)
                                                                                                                                         |                                                                                                                                                 
ACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTC  >  NC_000913_3_hsa_tpiA/1299361‑1299643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.