New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 839230	46 (1.030)	3 (0.070)	3/260	NT	6.3%	intergenic (‑23/+19)	ybiX/fiu	Fe(II)‑dependent oxygenase superfamily protein/catecholate siderophore receptor
	?	NC_000913_3_hsa_tpiA	= 839234	45 (1.060)					intergenic (‑27/+15)	ybiX/fiu	Fe(II)‑dependent oxygenase superfamily protein/catecholate siderophore receptor

AACTTGCGCACCTTGTGCGCCGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTAAACGTTTAGCTGGAAGTCGAGA  >  NC_000913_3_hsa_tpiA/839088‑839378                                                                                                                                                   |                                                                                                                                                 aaCTTGCTCACATTGGGCGCCGGTGATGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCCTACAATTTCTCCAAAAAGTGGGGCCTgccc                                                                                                                                                >  2:199528/1‑147 (MQ=255)         cACCTTGTGCGCCGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATAATATGCTGGTCCGAAAAAGTGGGGCCTGCGCCCCACATc                                                                                                                                        <  2:388115/149‑1 (MQ=255)          aCCTTGTGCGCCGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCt                                                                                                                                       >  1:620193/1‑149 (MQ=255)               gtgCGCCGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATc                                                                                                                                  >  2:520854/1‑149 (MQ=255)                     cGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAAt                                                                                                                            >  1:435259/1‑149 (MQ=255)                             aCGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTg                                                                                                                    >  1:507035/1‑149 (MQ=255)                              cgcgGCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTgg                                                                                                                   <  2:508515/149‑1 (MQ=255)                               gcgTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACAACTGAATCAGAAATGCATATTGGc                                                                                                                  >  2:583332/1‑149 (MQ=255)                                     atccaCCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAg                                                                                                            >  2:481737/1‑149 (MQ=255)                                     atccaCCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATACGAAATGCATATTGGCTGTGAg                                                                                                            >  2:26336/1‑149 (MQ=255)                                     atccaCCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGAGCGCCATTTTTGAATGAGAAATGCATATTGGCTGTGAg                                                                                                            <  1:200404/149‑1 (MQ=255)                                     atccaCCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGACAACACACCGGGAATGTGTTACATCATACACTTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCCGAAATGCATATTGGCTTTGAg                                                                                                            >  2:96223/1‑149 (MQ=255)                                         aCCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGACTGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGTCCGTGAGCaag                                                                                                        >  2:191853/1‑149 (MQ=255)                                          cccATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTCTCGCGATAACACTCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCaaga                                                                                                       <  1:277027/149‑1 (MQ=255)                                           ccATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCaagaa                                                                                                      >  1:735219/1‑149 (MQ=255)                                            cATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCGGATTGGAATCAGAAATGCATATTGGCTGTGAGCaagaag                                                                                                     <  1:832562/149‑1 (MQ=255)                                            cATTCGGCTTGATCCAGTTGTTCGCGAAAGCGAGCGACGTCCTGTGGCGCTAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAACAGTGGGGCCTGCGCTCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCaagaag                                                                                                     <  1:604261/149‑1 (MQ=255)                                               tCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGtt                                                                                                  <  2:500527/149‑1 (MQ=255)                                                    ttGTTCCAGGTGTTGGCGAGAGCGAGGGTGGTGCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCGCCAAAAAGTGGGGCCTGCGCCCCACATTTGAATCACGTATGCATTTTTTCTGTGCGCGAGGCGGTTccggg                                                                                             <  2:380526/149‑5 (MQ=255)                                                       ttCCAGTTGTTCGCGAAACCGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTc                                                                                          <  1:495215/149‑1 (MQ=255)                                                       ttCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTc                                                                                          >  1:54545/1‑149 (MQ=255)                                                         ccAGTTGTTCGCGAAAGCGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGc                                                                                        <  1:498172/149‑1 (MQ=255)                                                         ccAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGc                                                                                        <  1:498015/149‑1 (MQ=255)                                                           aGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGccc                                                                                      >  1:148793/1‑149 (MQ=255)                                                             ttgttCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCGGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCgg                                                                                    <  1:731743/149‑1 (MQ=255)                                                                ttCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTg                                                                                 >  2:481554/1‑149 (MQ=255)                                                                 tCGCCAAAACGACTGACCGCCTGTGGCGATAACACGCCGGAAATGTGCTACATGAAACAATTTCTCCAAAAAGTAGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTTGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGa                                                                                <  2:619156/149‑1 (MQ=255)                                                                     gAAAACGGGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAGAGTGGGGCCTGCGCCCCACATCTGAATCCGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAAc                                                                            <  2:676845/149‑1 (MQ=255)                                                                                     cggtgGCGATAAGATGACGGGAATGTTGTACATCATACAATTTCTCCCAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCttgtt                                                            <  2:349215/147‑1 (MQ=255)                                                                                         ggCGATAACACGCCGGGAATGTGGTACATCATACAATTGCTCCAAAAAGTGTGGCCTGCGCACCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTTTTGGCTCGCCCGGATGATAACGGTCGCCGCTTTTGttgact                                                        <  2:408340/149‑3 (MQ=255)                                                                                          gCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGCAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGttgattg                                                       >  1:603311/1‑149 (MQ=255)                                                                                                    gCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCCCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGACACGCCGTa                                             >  2:320974/1‑149 (MQ=255)                                                                                                      cGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGTGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAAt                                           <  1:523283/149‑1 (MQ=255)                                                                                                          aaTGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGt                                       <  1:642577/149‑1 (MQ=255)                                                                                                              tgGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGCTATCa                                   >  2:314580/1‑149 (MQ=255)                                                                                                                taccactatACAATTTTGCCAAAAAGTGGGCCCGTCGTCTCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAATGTTTTTGTCTTGCCCGGGTGATAACGGTAGCCGCTCTTGTGGGTTGAGGCGACGTAATTGGTATCaaa                                 <  2:37503/142‑1 (MQ=255)                                                                                                                     tcatACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCAGCTCGTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGt                            <  2:599517/149‑1 (MQ=255)                                                                                                                      catACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGtt                           >  1:547947/1‑149 (MQ=255)                                                                                                                       atACAATGTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAAGCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTg                          <  2:712298/149‑1 (MQ=255)                                                                                                                        tACAATTTCTCCAAAAAGTAGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGt                         >  2:457419/1‑149 (MQ=255)                                                                                                                         aCAATTTCTCCAAAAAGTGGGGCCTGCgccccactttttggagaaattgtatgatgtaccacattcccggcgtgttatcgccacaggacgtcgctcgttttcgcgaacaactggaac                                                        <  2:242169‑M2/117‑91 (MQ=255)                                                                                                                         aCAATTTCTCCAAAAAGTGGGGCCTGCgccccactttttggagaaattgtatgatgtaccacattcccggcgtgttatcgccacaggacgtcgctcgttttcgcgaacaactggaac                                                        >  1:242169‑M2/1‑27 (MQ=255)                                                                                                                            aTTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTAAAc                     <  1:309545/149‑1 (MQ=255)                                                                                                                            aTTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTAAAc                     <  1:101069/149‑1 (MQ=255)                                                                                                                                 tcCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGCCGTAATCGGTATCAAACAGGTGGTCAAGGTTTa                >  1:294289/1‑149 (MQ=255)                                                                                                                                   cAAAAAGGGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTAAACGTTTAGc              <  2:728811/149‑1 (MQ=255)                                                                                                                                    aaaaaGTGGGGCCTGCgccccactttttggagaaattgtatgatgtaccacattcccggcgtgttatcgccacaggacgtcgctcgttttcgcgaacaactggaacaagccgaatgggtggatggacgcgtcaccaccggcgcacaagg             <  2:293270‑M2/149‑134 (MQ=255)                                                                                                                                    aaaaaGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGCTGTAAACGTTTAGCt             >  1:639690/1‑149 (MQ=255)                                                                                                                                     agtaGTGGGGCTTGTGCCCCACATCTGAAGTAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTATCCGCTCTTGTTGAGTGGGGCGACGTAATCGGTATCAAACAGGTTGTAAACGTTTAGCTg            <  2:54294/146‑1 (MQ=255)                                                                                                                                          tGGGGCCTGCGCCCCACATCTGAATCCGAAATGCATATTGGCTGTGCGCAAGAAGGTTCTTGGCTCGCCCGGGTGTTAAAGATAGCCGTTCTTGTTGATTACGGAGACATATTCGCTATACAACAGTTCGTAGACGTTTAGccgcaaat       >  2:411004/1‑142 (MQ=255)                                                                                                                                             tgCCTGGGCCCCACATCTGAATGAGAAATGCATATTGGCTGGGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTAAACGTTTAGCTGGAAGTCga    <  2:61499/148‑1 (MQ=255)                                                                                                                                               ccTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTAGGCTCGCTCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTAAACGTTTAGCTGGAAGTCgaga  <  1:749970/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 AACTTGCGCACCTTGTGCGCCGGTGGTGACGCGTCCATCCACCCATTCGGCTTGTTCCAGTTGTTCGCGAAAACGAGCGACGTCCTGTGGCGATAACACGCCGGGAATGTGGTACATCATACAATTTCTCCAAAAAGTGGGGCCTGCGCCCCACATCTGAATCAGAAATGCATATTGGCTGTGAGCAAGAAGGTTCTTGGCTCGCCCGGGTGATAACGGTAGCCGCTCTTGTTGATTGAGGCGACGTAATCGGTATCAAACAGGTTGTAAACGTTTAGCTGGAAGTCGAGA  >  NC_000913_3_hsa_tpiA/839088‑839378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.