New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1070072	40 (0.900)	3 (0.070)	3/256	NT	7.1%	coding (283/495 nt)	rutF	flavin:NADH reductase
	?	NC_000913_3_hsa_tpiA	= 1070090	41 (0.980)					coding (265/495 nt)	rutF	flavin:NADH reductase

GCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAGACGGACGCCCCACGATTCAGGCACACCAGTAATGTGGGCGGCGTATCGGTCACA  >  NC_000913_3_hsa_tpiA/1069950‑1070232                                                                                                                                             |                                                                                                                                               gcAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTtttgccgc                                                                                                                                        >  1:333291‑M2/1‑141 (MQ=255) gcAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGGGTTCCATGGGCGTtttgccgc                                                                                                                                        <  1:269337‑M2/149‑9 (MQ=255)       cAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCGTGGGCGTTTTGCCGCcaacaa                                                                                                                                  >  1:494905/1‑149 (MQ=255)          aaTGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGt                                                                                                                               >  2:450625/1‑149 (MQ=255)            tGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGttt                                                                                                                             <  1:90419/149‑1 (MQ=255)                gTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCACCGGACGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCCAAAAGGTTTGaaa                                                                                                                         >  2:800318/1‑149 (MQ=255)                  gggTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATCGGCGTTTTGCCGCCAACAAGGTTTGAAAGc                                                                                                                       >  2:229540/1‑149 (MQ=255)                    gggCCCACGCTCACCCCCTGGCTGATACGGCAGTAAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCgg                                                                                                                     <  2:12382/147‑1 (MQ=255)                       ccGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTc                                                                                                                  >  2:459378/1‑149 (MQ=255)                        cGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTcc                                                                                                                 >  2:734699/1‑149 (MQ=255)                        cGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCAGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCAATGGCCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGcccc                                                                                                                 >  2:397141/1‑149 (MQ=255)                         gACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGAGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGGTTTGCCGCCCAAAAGGTTTGCAAGCGGCTccc                                                                                                                >  2:364473/1‑148 (MQ=255)                           cGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGACACCCCCGCCTGCCAGAAGGCCGAGACAAAGCCGGGTTGCAGCGGCGTTTTGCCGCCAAAACGGTTTGAAAGCGCCACCTgg                                                                                                              >  2:256227/1‑148 (MQ=255)                                accaccTGGCTTATACGGCAGTCAAACGAAACCACAGCCTCTTCCCGTTGCGGGCATCCGGTCCCCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGCCTTGCTGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGgc                                                                                                         <  1:529823/149‑1 (MQ=255)                                  caccTGGCTGACACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCCCCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGgcgc                                                                                                       <  1:125974/149‑1 (MQ=255)                                           gATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTtt                                                                                                                                              <  1:234809‑M2/101‑3 (MQ=255)                                           gATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTtt                                                                                                                                              >  2:234809‑M2/1‑99 (MQ=255)                                             tACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTAttt                                                                                            >  1:461355/1‑149 (MQ=255)                                               cGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTac                                                                                          <  2:111499/149‑1 (MQ=255)                                                  cAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTacaca                                                                                       <  2:102423/149‑1 (MQ=255)                                                     tCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAg                                                                                    >  1:159115/1‑149 (MQ=255)                                                         aCGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGtt                                                                                >  1:571582/1‑149 (MQ=255)                                                         aCGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCCGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCACAACGGTTTGAAAGCGGCTCCAGCACGGCGCTAAGTGGGTTTACACACAGCGtt                                                                                >  2:365598/1‑149 (MQ=255)                                                          cGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTc                                                                               >  1:48530/1‑149 (MQ=255)                                                            aaaCCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGa                                                                             >  1:409779/1‑149 (MQ=255)                                                             acccAGAGCCTCCTCCAGTTGCGGGCAGCCGGGCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGAt                                                                            <  1:220524/147‑1 (MQ=255)                                                              aCCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTACCCGGCGCTAAGTGTATTTACACACAGCGTTCGAtt                                                                           >  2:674105/1‑149 (MQ=255)                                                                    gtctctTCCAGTTGCCGACATCCGGTCTCCCCTGTCTGCCAGCGGGCGGCGGATAAGCGGTGGTCCATGGGCGTTTTGCAGCCAAAAATGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCAtt                                                                     <  1:377635/147‑1 (MQ=255)                                                                    gCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGGCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCAtt                                                                     <  2:556141/149‑1 (MQ=255)                                                                       tctTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGaa                                                                  <  1:109568/149‑1 (MQ=255)                                                                        cctacAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCGGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAAt                                                                 <  1:802013/145‑1 (MQ=255)                                                                          tCCAGTCGCGGGCCTCCGGTCACCCCCGGCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGc                                                               <  2:215303/149‑1 (MQ=255)                                                                                   gggCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCAGGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCTCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAgac                                                      <  1:444730/149‑1 (MQ=255)                                                                                      cATCCGGTCGCCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGCTCGAACGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAgacgga                                                   <  2:135284/149‑1 (MQ=255)                                                                                       aTCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTAAAAGCGGCTCCTGCCCGGCGCTAAGTGTGTTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAgacggac                                                  >  1:147118/1‑149 (MQ=255)                                                                                                cccccGTCTGCCAGCGGGCGGCGGTAAAGCGGTGTTCCATGGTCGTTTTGCCGCCAAAAAGGTTTGCAAGCGGCTGCTGCCCGGCGCTAAGTGTATTGACACACAGCGTTTGATTGTAATTGAATGGCGGCAAGACGGATGCCCCACGa                                         <  2:536813/149‑1 (MQ=255)                                                                                                   ccGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAGACGGACGCCCCACGATTc                                      <  1:654357/149‑1 (MQ=255)                                                                                                           cAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAGACGGACGCCCCACGATTCAGGCacac                              >  2:529668/1‑149 (MQ=255)                                                                                                           cAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAGACGGACGCCCCACGATTCAGGCacac                              <  1:537008/149‑1 (MQ=255)                                                                                                           cAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCACGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTGATTGAATGCCGGCCAGACGGAAGCCCACCGATTCAGGcacga                              >  1:338955/1‑147 (MQ=255)                                                                                                                     cggcAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTCAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAGACGGACGCCCCACGATTCAGGCACACCAGTAAtgtg                    <  2:555218/149‑1 (MQ=255)                                                                                                                      ggcAAAGCGGTGTTCCATGGGCGTtttgccgccgcccgctggcagacgggggtgaccggatgcccgcaactggaagaggctctggtttcgtttgactgccgtatca                                                              <  2:378548‑M2/106‑83 (MQ=255)                                                                                                                      ggcAAAGCGGTGTTCCATGGGCGTtttgccgccgcccgctggcagacgggggtgaccggatgcccgcaactggaagaggctctggtttcgtttgactgccgtatca                                                              >  1:378548‑M2/1‑24 (MQ=255)                                                                                                                       gcAAAGCGGTGTTCCATGGGCGTtttgccgccgcccgctggcagacgggggtgaccggatgcccgcaactggaagaggctctggtttcgtttgactgccgtatcagccaggtggtgagcgtcggcacccacgacattctgttttgcgcc                  <  1:66545‑M2/149‑127 (MQ=255)                                                                                                                          aaGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAGACGGACGCCCCACGATTCAGGCACACCAGTAATGTGggcgg               >  2:515088/1‑149 (MQ=255)                                                                                                                            gCGGTGTTCCATGGCCGTTTTGCCGTCAAAAAGGTTTGAAAACGGCTCCTGCCCGGCGCTAAGTGTGTTTAAACACAGCGTTCGATTTTCATTAAATGCCGGCCAGAAGAACGCCCCAAGAATCGGAGACAACAGTAATTTTCgcggcg             >  2:130268/1‑149 (MQ=255)                                                                                                                               gtgtTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAGACGGACGCCCCACGATTCAGGCACACCAGTAATGTGGGCGGCGTAt          >  1:448452/1‑149 (MQ=255)                                                                                                                                      aTGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCGGGCCAGACGGAAGCCCCACGATTCCGGCACACCAGTAAGTTGGGCGGCGTATCGGTccc   >  2:220747/1‑147 (MQ=255)                                                                                                                                       tGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAGACGGACGCCCCACGATTCAGGCACACCAGTAATGTGGGCGGCGTATCGGTcaca  >  1:705163/1‑149 (MQ=255)                                                                                                                                           cGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGaa                                                                  <  2:203857/81‑1 (MQ=255)                                                                                                                                           cGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGaa                                                                  >  1:203857/1‑81 (MQ=255)                                                                                                                                             |                                                                                                                                               GCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCTGCCAGCGGGCGGCGGCAAAGCGGTGTTCCATGGGCGTTTTGCCGCCAAAAAGGTTTGAAAGCGGCTCCTGCCCGGCGCTAAGTGTATTTACACACAGCGTTCGATTTTCATTGAATGCCGGCCAGACGGACGCCCCACGATTCAGGCACACCAGTAATGTGGGCGGCGTATCGGTCACA  >  NC_000913_3_hsa_tpiA/1069950‑1070232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.