| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_000913_3_hsa_tpiA | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_hsa_tpiA | 1978503 | 1979278 | 776 | 46 [1] | [1] 46 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 1978502 | 0 (0.000) | 39 (0.930) | 34/258 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913_3_hsa_tpiA | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTA > NC_000913_3_hsa_tpiA/1979139‑1979420 | gtctctacacttatctaacatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa < 1:358386‑M2/9‑1 (MQ=255) ttacacttatctaagatttttcctaaatctacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatccgtgattcaaatcacacaaaacacctaattacttaacataaatgTATAAGTCATACt > 2:215286‑M2/137‑149 (MQ=255) atctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt < 1:427456‑M2/21‑1 (MQ=255) ctaagatttttccaaaatcgacgcatctgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg < 2:651805‑M2/23‑1 (MQ=255) taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTGTggg > 1:490383‑M2/126‑149 (MQ=255) atttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTa > 2:815342‑M2/122‑149 (MQ=255) ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAAt > 1:345411‑M2/115‑149 (MQ=255) ctaaatcgacgcaactgtactcgtcactacacgcacatacaaaggaggggggctgagattttcaataatgcgtgatgcagatcacacaaaacaataaattccttaacataaatgTATAAGTCATAATTTTGTTTTGGGTGTCT‑TTAAAt > 2:184955‑M2/115‑149 (MQ=255) aattgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATACGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTg < 2:366800‑M2/38‑1 (MQ=255) tcgacgcaactgtactcgtcactacacgcacatacaacggaggagggctgcgattttcaataatgcgtgatgcggatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGGTTTGGGTGTAT‑TTCAATCTGtt > 1:201586‑M2/110‑149 (MQ=255) gcaactgttctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacataaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTaaaaa < 1:746166‑M2/45‑1 (MQ=255) actgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAgtc > 2:276963‑M2/102‑148 (MQ=255) tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGtttt > 1:788733‑M2/100‑149 (MQ=255) gtactcgttaatacacggacatacaacggtggggggctgcgatttttaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGttttt < 2:235925‑M2/51‑1 (MQ=255) gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGttttt < 1:495797‑M2/51‑1 (MQ=255) gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGttttt > 1:679437‑M2/99‑149 (MQ=255) tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTc < 1:309466‑M2/52‑1 (MQ=255) tcgtcactacacgcacatacaacggaggggggctgcgattttcactaatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTcgct > 2:33777‑M2/95‑149 (MQ=255) tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacaccaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAATGTtttcacg > 1:59598‑M2/95‑146 (MQ=255) tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTcgct > 2:534806‑M2/95‑149 (MQ=255) cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTcgcta < 1:201915‑M2/56‑1 (MQ=255) tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTtcgctactctac > 2:380264‑M2/88‑148 (MQ=255) tacaacggaggggggctgcgatgttcaataatgcgtcatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTCCGCTACGCTAGCAAGCaaaaa < 2:262345‑M2/72‑1 (MQ=255) acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattgcttaacataaatgTATACGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt > 1:327737‑M2/77‑149 (MQ=255) aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTTTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa < 2:561070‑M2/75‑1 (MQ=255) aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa > 1:657776‑M2/75‑149 (MQ=255) acggctgggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa > 2:312045‑M2/74‑149 (MQ=255) aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg > 1:321791‑M2/70‑149 (MQ=255) gggggctgctattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGAAAAAATGAAACAGGa > 2:814861‑M2/68‑149 (MQ=255) aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTCTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTCTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCTAAATGgcataca > 2:838400‑M2/49‑146 (MQ=255) tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTGTAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc > 2:788785‑M2/47‑149 (MQ=255) tgcgtaatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc < 2:528605‑M2/103‑1 (MQ=255) gcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg > 2:605975‑M2/46‑149 (MQ=255) cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa > 1:471751‑M2/38‑149 (MQ=255) gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCTCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACGGTCaaa > 2:190527‑M2/36‑149 (MQ=255) atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa > 1:634904‑M2/35‑149 (MQ=255) aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc < 2:56262‑M2/123‑1 (MQ=255) aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc > 2:658118‑M2/26‑149 (MQ=255) aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata > 1:631591‑M2/19‑149 (MQ=255) tacttaacATAAATGTATAAGTAATACTTTTCGGGTCGGTGTATCATGTCGATG‑TAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc < 1:397352/142‑1 (MQ=255) ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc < 1:215286‑M2/137‑1 (MQ=255) aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTAACCGTAAATAATCATCTg > 1:262117‑M2/11‑149 (MQ=255) cataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAACAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCt > 2:215725‑M2/9‑149 (MQ=255) cataaacgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCt < 1:17441‑M2/141‑1 (MQ=255) ataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCta > 1:519171‑M2/8‑149 (MQ=255) ataaatgTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGCTAAAAAGTTTTTCGCTACGCTAGCAAGCACAAATGAAACAGCAATAATCGAAATGGGAAGTTGCACACAGTCAAAATACCTCAACGTaaataatcatcctcta > 2:682799‑M2/8‑144 (MQ=255) | CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTAT‑TTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTA > NC_000913_3_hsa_tpiA/1979139‑1979420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |