New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 3468761	41 (0.920)	4 (0.090)	3/270	NT	8.5%	coding (1093/2694 nt)	chiA	periplasmic endochitinase
	?	NC_000913_3_hsa_tpiA	3469086 =	46 (1.050)					coding (768/2694 nt)	chiA	periplasmic endochitinase

TCACAGCACCGCCATTATTATCCGGCTTAACGGAACAGGAGCCAGGGTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGAACATCAGGAGCCGGTTTAA  >  NC_000913_3_hsa_tpiA/3468938‑3469228                                                                                                                                                     |                                                                                                                                               tCACAGCACCGCCATTATTATCCGGCTTAACGGAACCGGAGCCAGGGTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTTTTTCGCCTCGCCTGGGGCATTTGCCGCGCCt                                                                                                                                                >  1:690543/1‑149 (MQ=39) tCACAGCACCGCCATTATTATCCGGCTTAACGGAACAGGAGCCAGGGTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCCGGGCAATTTGCCGCGCCt                                                                                                                                                >  2:694088/1‑149 (MQ=255)           gCCATTATTATCCAGCTTAACGGAACAGGAGCCAGGGTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCCAACATAACGCCAAGAGTTACTGCCATCGATTACTTTCGCATCGCCTGGCAAATTCGCCCACCCTAccccaccga                                                                                                                                      >  2:261815/1‑143 (MQ=255)            ccATTATTATCCGGCTTAACGGAACAGGAGCCAGGGTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGc                                                                                                                                     <  1:457203/149‑1 (MQ=255)            ccATTATTATCCGGCTTAACGGAACAGGACGCGACGTTTCCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTCTTTTCGCATCGCCCGGGCAATTTGACGCGGCTACCCACCAGGc                                                                                                                                     >  2:388032/1‑149 (MQ=25)               acgccgccgttatcaatttcacaggtagtcgggttaccgtactgactcaattccgcagcggtagctgtacgctcgagacgccatgggttattggagttttcagcgctggtaccccgtgggcaatctttagacccCACGCCCCAGGCGtt                                                                                                                                  >  1:315102‑M2/135‑149 (MQ=255)                     tCCGGCTTAACGGAACAGGAGCCAGGGTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCCAGCGTTCTtata                                                                                                                            >  2:462505/1‑149 (MQ=255)                     cccGGCTTAATGGAACAGGAGCCAGGGTTACCATACTGGCTGATTTCTGTTGCCTTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTCTCGCACCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTtata                                                                                                                            <  2:636128/148‑1 (MQ=255)                                     aGGAGCCAGGGTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAg                                                                                                            >  1:753091/1‑149 (MQ=255)                                             gggTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTa                                                                                                    <  1:455334/149‑1 (MQ=255)                                              ggTTGCCATACTTTCTGATTTCTGTTGCCGTTGCCGCCCGAACATAACGCCATCGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTAc                                                                                                   <  1:694643/149‑1 (MQ=255)                                              ggTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTAc                                                                                                   >  1:537194/1‑149 (MQ=255)                                               gTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTAGTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTAGCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTAcc                                                                                                  >  1:603337/1‑149 (MQ=255)                                                ttACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCa                                                                                                 <  1:210736/149‑1 (MQ=255)                                                       aCTGGCTGATGTCTGTTGGCGTTGCTGGGCGAACAGAACGCCATGGGTTATTGCGATCGTTGTCTTTCGCTCCGCATGGGCAATTTGCCGTGCATACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTagaa                                                                                          <  2:47334/149‑1 (MQ=255)                                                           gCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAAc                                                                                      >  2:265851/1‑149 (MQ=255)                                                           gCTGATTTCCGTTGCCGTTGCCGTCGGAACATAACGCCTAGTGTTACTGGCATCGTGTGCTTTCGCATGGTCCGGGCGATTGTCCTTGCCTACCCTGCAGGAGTTCTTATAAATGACGCCGTTATAGATAACGTACCATGTAGAAGAAc                                                                                      <  2:583288/149‑1 (MQ=255)                                                               aTTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTc                                                                                  >  2:289758/1‑149 (MQ=255)                                                                    tGTTGCGTTTGCCGCTGGAACCTAACGCCAGGGGTTACTGGCATTGTTTTCTTTCGCATCTCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGAc                                                                             <  2:364846/149‑1 (MQ=255)                                                                      ttgccgttgccgCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCt                                                                           <  2:537194/149‑1 (MQ=255)                                                                        gccgttgccgCGCGAACATAACGCCATGGGATACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAGGTAGAAGAACCTTCCTGACtttt                                                                         >  1:448121/1‑149 (MQ=255)                                                                         ccgttgccgCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATGACGTACCAGGTCGAAGAACCTTCCTGGTCTTTc                                                                        >  2:45898/1‑149 (MQ=39)                                                                          cgttgccgCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTcc                                                                       <  1:333010/149‑1 (MQ=255)                                                                          cgttgccgCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAACAGCCTTCCTGATCTTTcc                                                                       >  2:40527/1‑149 (MQ=255)                                                                                 gcgcgAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctac                                                                >  1:473251/1‑149 (MQ=255)                                                                                        cATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCa                                                         >  1:231804/1‑149 (MQ=255)                                                                                         aTAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCAGTTCTAGGTAATGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCAt                                                        >  1:578345/1‑149 (MQ=255)                                                                                          tatcGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAGTGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATa                                                       <  2:564422/146‑1 (MQ=255)                                                                                          tAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGTCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATa                                                       <  1:246728/149‑1 (MQ=255)                                                                                            aCGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGt                                                     >  1:600792/1‑149 (MQ=255)                                                                                            aCGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGt                                                     >  1:60737/1‑149 (MQ=255)                                                                                             cGCCATGTGTTACGGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGtt                                                    <  1:130573/149‑1 (MQ=255)                                                                                                     gTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAAGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTCCAGCATAGTTGTCGttgg                                            >  2:621109/1‑147 (MQ=255)                                                                                                      ttACTGGCTTCTTTCTTCTACGCATGCCCTGGGCAACTTTCCGCGCTTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATTGATAACCTACCATGTAGAAGAACGTTCCTGACCTCTGCAGGCTACTACAGCATAGTTGTCGTTTGa                                           <  2:224855/149‑1 (MQ=255)                                                                                                       tACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGAc                                          <  1:98469/149‑1 (MQ=255)                                                                                                        aCTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACt                                         <  1:523728/149‑1 (MQ=255)                                                                                                         ttggagttttcagcgctgttaccccgtgggcaatctttagacccTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAg                                                      <  1:116398‑M2/91‑1 (MQ=255)                                                                                                         ttggagttttcagcgctggtaccccgtgggcaatctttagacccTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAg                                                      >  2:116398‑M2/45‑135 (MQ=255)                                                                                                            gCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATCCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATc                                     <  1:278061/149‑1 (MQ=255)                                                                                                            gCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATACCGCCGGTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCAAGCCTACTACAGCATAGTTGCCGTTTGCCTTATc                                     >  2:415180/1‑149 (MQ=255)                                                                                                               tCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTTTCGTTTGACTTATCCGc                                  >  2:56140/1‑149 (MQ=255)                                                                                                               tCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGc                                  <  1:507301/149‑1 (MQ=255)                                                                                                                cGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCt                                 <  1:473629/149‑1 (MQ=255)                                                                                                                  ttttCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTgg                               >  1:4671/1‑149 (MQ=255)                                                                                                                       tttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGGTGTTTGACTTATCAGCTGGggctt                          >  1:570558/1‑148 (MQ=255)                                                                                                                            cATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGCCTTATCAGCTGGGGCTGGCTGa                     >  1:16813/1‑149 (MQ=255)                                                                                                                                tccTGGGCACTGTGCCGCGCCTACCCACCAGGCGTTCTTATAAACGCCTCCATTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGAACAt                 <  1:612459/148‑1 (MQ=255)                                                                                                                                gCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGAACAt                 <  2:215916/149‑1 (MQ=255)                                                                                                                                  gtgggcaagctgccgacccTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGAACATCa               <  2:624090‑M2/130‑1 (MQ=255)                                                                                                                                  cTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGACGACGCTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGACCATCa               >  1:334180/1‑149 (MQ=255)                                                                                                                                   tGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGAACATCAg              <  1:209758/149‑1 (MQ=255)                                                                                                                                       cAATTTGCCGCGCCTACCCACCAGGCGGTGTGATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGAACATCAGGAGc          <  2:237161/149‑1 (MQ=255)                                                                                                                                           ttGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGAACATCAGGAGCCGGt      <  1:425322/149‑1 (MQ=255)                                                                                                                                              ccGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGAACATCAGGAGCCGGTTTa   <  1:289758/149‑1 (MQ=255)                                                                                                                                               cgcgCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGAACATCAGGAGCCGGTTTaa  <  1:624653/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               TCACAGCACCGCCATTATTATCCGGCTTAACGGAACAGGAGCCAGGGTTACCATACTGGCTGATTTCTGTTGCCGTTGCCGCGCGAACATAACGCCATGGGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACAGCATAGTTGTCGTTTGACTTATCAGCTGGGGCTGGCTGAACATCAGGAGCCGGTTTAA  >  NC_000913_3_hsa_tpiA/3468938‑3469228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.