New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2257359 =	28 (0.970)	6 (0.220)	4/270	3.4	19.1%	intergenic (‑24/+70)	psuT/psuG	putative nucleoside transporter/pseudouridine 5'‑phosphate glycosidase
	?	NC_000913_3_hsa_tpiA	2257383 =	24 (0.860)					intergenic (‑48/+46)	psuT/psuG	putative nucleoside transporter/pseudouridine 5'‑phosphate glycosidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAGCGATTTGCAGCAGCAGTGCGGCTCCAACCGTGCGCAAACTGATGCTCTTTTTATTCACTGACAACAGAAATGCTATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCCGCGAGACGCTGATATTCTTTGGCAATTTCGCTCGCCAGAATGGCGTTGTTGAACACCAGCTGGATGTTG  >  NC_000913_3_hsa_tpiA/2257212‑2257504                                                                                                                                                    |                                                                                                                                                  tAGCGATTTGCAGCAGCAGTGCGGCTCCAACCGTGCGCAAACTGATGCTCTTTTTATTCACTGACAACAGAACTGCTATTGCCAGTAACACCACCATCCCCACAACACTTATCATTATATCCATAATGATTTTCCCTTACTGCCGGTaa                                                                                                                                                  >  1:137721/1‑149 (MQ=255)     gATTTGCAGCAGCAGTGCGGCTCCAACCGTGCGCAAACTGATGCTCTTTTTATTCACTGACAACAGAAATGCTATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAAccc                                                                                                                                              >  1:250870/1‑149 (MQ=255)        ttGCAGCAGCAGTGCGGCTCCAACCGTGCGCAAACTGATGCTCTTTTTATTCACTGACAACAGAAATGCTATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGc                                                                                                                                           <  1:448096/149‑1 (MQ=255)                   gTGCGGCTCCAACCGTGCGCAAACTGATGCTCTTTTTATTCACTGACAACAGAAATGCTATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAg                                                                                                                                <  1:359146/149‑1 (MQ=255)                        gCTCCAACCGTGCGCAAACTGATGCTCTTTTTATTCACTGACAACAGAAATGCTATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGtttt                                                                                                                           <  1:215542/149‑1 (MQ=255)                        gCTCCAACCGTGCGCAAACTGATGCTCTTTTTATTCACTGACAACAGAAATGCTATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGtttt                                                                                                                           <  2:369825/149‑1 (MQ=255)                         cTCCAACCGTGCGCAAACTGATGCTCTTTTTATTCACTGACAACAGAAATGCTGGGGTGAGTAACATCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTg                                                                                                                          <  1:226545/149‑1 (MQ=255)                             aaCCGTGCGCAAACTGATGCTCTTTTTATTCACTGACAACAGAAATGCTATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCAGGTAAACCCGGCGTCAGCGCCAGGGTTTGGTAt                                                                                                                      >  2:317331/1‑149 (MQ=255)                                   tcgcAAAGTGATGCTCTTTTTATTCACTGACAACAGAAATGCTATTGCCAGTAAAACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTtga                                                                                                                <  2:50351/148‑1 (MQ=255)                                                    ttttATTCACTGACAACAGAAATGCTATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTgg                                                                                                                         <  2:438679/123‑1 (MQ=255)                                                    ttttATTCACTGACAACAGAAATGCTATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTgg                                                                                                                         >  1:438679/1‑123 (MQ=255)                                                        aTTCAATGACAACAGAAATGCCATTGCCAGTAACACCATCATCCCCACAGCACTTCTCATTATATCCTTAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTc                                                                                           <  2:125145/149‑1 (MQ=255)                                                                             tATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCcg                                                                      >  1:232925/1‑149 (MQ=255)                                                                                   cAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCATCAGCGCCAGGTTTAGGTGCACGTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCcgacagcc                                                                >  1:118761/1‑143 (MQ=255)                                                                                     gTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACg                                                                                                 >  1:261431/1‑114 (MQ=255)                                                                                     gTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACg                                                                                                 <  2:261431/114‑1 (MQ=255)                                                                                                 tCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCCGCGAGACGCTGATATTCTTTg                                                  <  1:453857/149‑1 (MQ=255)                                                                                                  ccccAGATCACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCCGCGAGACGCTGATATTCTTTgg                                                 <  1:192764/149‑1 (MQ=255)                                                                                                     cacaACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGc                                                                                                     >  1:442072/1‑94 (MQ=255)                                                                                                     cacaACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGc                                                                                                     <  2:442072/94‑1 (MQ=255)                                                                                                      acaacaCTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCCGCGAGACGCTGATATTCTTTGGCAAt                                             >  2:364174/1‑149 (MQ=255)                                                                                                             ttCTCATTATATCCCTAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCACCGCCAGGTTTTGGAATGCTTGATGTGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAATCTGCGAGACGGTGCTATTCTTTGGCAATTtcgctc                                      >  2:466161/1‑149 (MQ=255)                                                                                                                           aTAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCCGCGAGACGCTGATATTCTTTGGCAATTTCGCTCGCCAGAATGGCgtt                        >  1:455295/1‑149 (MQ=255)                                                                                                                           aTAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCCGCGAGACGCTGATATTCTTTGGCAATTTCGCTCGCCAGAATGGCgtt                        >  2:75902/1‑149 (MQ=255)                                                                                                                                 agttgcccTTGGTGCCGGTAAACGCGGCGTGCGCGCCAGGTTTTGGTATGCTTGGTGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAAGTAACCCGCGAGACGCTGATATTCTTTGGCAATTTCGCTCGCCAGAATGGCGTTGTTGaa                  <  2:9245/144‑1 (MQ=255)                                                                                                                                  ttttCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCCGCGAGACGCTGATATTCTTTGGCAATTTCGCTCGCCAGAATGGCGTTGTTGAac                 <  2:455295/149‑1 (MQ=255)                                                                                                                                                cGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCCGCGAGACGCTGATATTCTTTGGCAATTTCGCTCGCCAGAATGGCGTTGTTGAACACCAGCTGGATGtt   <  1:345835/149‑1 (MQ=255)                                                                                                                                                 gatAAGCCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCCGCGAGACGCTGATATTCTTTGGCAATTTCGCTCGCCAGAATGGCGTTGTTGAACAGCAGCTGGATGTTg  <  1:108373/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TAGCGATTTGCAGCAGCAGTGCGGCTCCAACCGTGCGCAAACTGATGCTCTTTTTATTCACTGACAACAGAAATGCTATTGCCAGTAACACCACCATCCCCACAACACTTCTCATTATATCCATAATGATTTTCCCTTCATGCCGGTAAACCCGGCGTCAGCGCCAGGTTTTGGTATGCTTGATGAGTACGGGCGACGGCTTTCTGCCCGTCAGAAATTAACCCGCGAGACGCTGATATTCTTTGGCAATTTCGCTCGCCAGAATGGCGTTGTTGAACACCAGCTGGATGTTG  >  NC_000913_3_hsa_tpiA/2257212‑2257504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.