New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 3648122	21 (0.730)	4 (0.150)	4/264	3.4	17.1%	noncoding (60/84 nt)	agrA	inactive antisense sRNA
	?	NC_000913_3_hsa_tpiA	= 3648138	19 (0.700)					noncoding (76/84 nt)	agrA	inactive antisense sRNA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGC  >  NC_000913_3_hsa_tpiA/3647978‑3648270                                                                                                                                                 |                                                                                                                                                     cTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGa                                                                                                                                                  <  1:17449/149‑1 (MQ=255)         aTAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGt                                                                                                                                          >  2:63184/1‑149 (MQ=255)               aTACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGTAAAGTCGGttt                                                                                                                                    <  1:313025/149‑1 (MQ=255)                    gTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAACGTCGGattttttg                                                                                                                               >  1:117904/1‑148 (MQ=255)                               ttATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTc                                                                                                                    <  1:98155/149‑1 (MQ=255)                                     aaCCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACaa                                                                                                              <  1:106193/149‑1 (MQ=255)                                                       aTAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGa                                                                                            >  2:260121/1‑149 (MQ=255)                                                                     gTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACACAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTGGGACAAGGCTTAATATGACGATGACCCAGTGAAAGaat                                                                              >  1:437016/1‑149 (MQ=255)                                                                      tATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCACATGAGCGTGTGATTGTCCCCTCGCACAGGGAGGTCTGTTTTTTTCCATCCGGATGCGGTTGAGGCGTATAATGACGATGACCCAGTGAAAGtata                                                                             >  1:499433/1‑149 (MQ=255)                                                                        ttAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGtatata                                                                           <  1:48424/149‑1 (MQ=255)                                                                             aTTGATGCGTTAGATGATGGCTATCTAACTCCAGTAAGAACCACCCACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGATCTATTACATCCGGATTACGACAAGACTTAAGATAACAATGAACCACTTAAATGATTTAAATct                                                                      >  2:120395/1‑148 (MQ=16)                                                                                      ttAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAGCTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCGGATTCGGACAAGGCTTAATATGACGATAACCCAGTGAAAGTATAAAAATCATCACTGCGa                                                             >  1:278401/1‑149 (MQ=25)                                                                                           tgatgGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGATTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGatatat                                                        <  1:146691/149‑1 (MQ=255)                                                                                                   aTCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGt                                                >  1:294954/1‑149 (MQ=255)                                                                                                                 agagCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAg                                  <  1:63184/149‑1 (MQ=255)                                                                                                                 agagCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACCGCGATATATACCGAAGTGCTCCCTCCGCAAg                                  >  1:82450/1‑149 (MQ=255)                                                                                                                                    tGGAAAGTAAAAAACCGACGCAAAGTCGGAGATTTTAAAACCGGATTCGAACAAAACATAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCAATATATACCGAAGTGCTCCCTCCGCCAACTGAAAAAATCGCTAAtcc               >  2:395358/1‑147 (MQ=255)                                                                                                                                                aaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGt                                                <  1:38051/104‑1 (MQ=255)                                                                                                                                                aaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGt                                                >  2:38051/1‑104 (MQ=255)                                                                                                                                                aaCCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAg   <  1:284786/149‑1 (MQ=255)                                                                                                                                                 aCCGACGCAAAGTCGGTGTATTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCGCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGc  <  2:368739/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGC  >  NC_000913_3_hsa_tpiA/3647978‑3648270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.