| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 2118475 = | NA (NA) | 4 (0.120) | 4/270 | 4.2 | 11.8% | noncoding (10/186 nt) | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 3708345 = | 30 (0.930) | noncoding (74/86 nt) | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCA > NC_000913_3_hsa_tpiA/2118331‑2118609 | tCAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGc < 2:79341/149‑1 (MQ=255) cAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGGCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCt > 2:514825/1‑149 (MQ=255) cAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCt < 2:502639/149‑1 (MQ=255) aaGCCGCGCAGGATGGCGCTGGCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTCTTGTAGGCGGCCGCTTTTTGCCTGATGCGACGCTGAcgc < 2:564568/149‑1 (MQ=255) ccGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATACATCTGCGCATTCTGTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTc < 1:136538/149‑1 (MQ=255) ccGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCGTTTTTTCATCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTc > 1:350421/1‑149 (MQ=255) gcgcAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCtt < 2:365902/149‑1 (MQ=255) gATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAgg > 1:127648/1‑149 (MQ=255) gATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAgg > 1:329765/1‑149 (MQ=255) gATGGCGCTGTCGCCACGATTGCCGAATGTGTGGTTGCAGTGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTCAGGCTGCGTTTGTTTTTTTCGTTGCCGCTTTTTGCCTGCTGCCACGCTGCCACGCCTTTTCAgc > 2:153267/1‑148 (MQ=255) ggCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCt > 1:345809/1‑149 (MQ=255) gCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGc < 1:132338/138‑1 (MQ=255) gCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGc > 2:132338/1‑138 (MQ=255) cACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGa > 2:501842/1‑149 (MQ=255) cACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGa < 2:501166/149‑1 (MQ=255) gATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGca < 2:42138/149‑1 (MQ=255) aTTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCGCATAAATTTGATGCCAGGTACGGCTGCGTTTGTTTTGCTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCATATCAGGCCTACAAGACCCGAGcac > 1:528065/1‑149 (MQ=39) ttGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGcaca < 1:395466/149‑1 (MQ=255) ttGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCACCCTTACAACACCCGGGcaca < 2:508271/149‑1 (MQ=255) tgtgGTTGCCCAGCATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCt < 1:136984/104‑1 (MQ=255) tgtgGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCt > 2:136984/1‑104 (MQ=255) ccAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCAGACCCGAGCCCAGAACCGTAGGACGTATAAg > 2:408729/1‑149 (MQ=255) ccAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAg > 1:142615/1‑149 (MQ=255) aGAATAAGTAATTTCATTTTTTCCTCATAATTTTGATGCTAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGc < 2:167183/149‑1 (MQ=255) aTAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGtt < 1:501842/149‑1 (MQ=255) tAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCATGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTc < 1:226775/149‑1 (MQ=255) gTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCAcg < 1:29653/149‑1 (MQ=255) gTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGACGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTCTCAGGCCTACAAGACCCGAGGACAGAACCGTACGACGGATAAGGCGTTCAcg > 2:379544/1‑149 (MQ=255) tcccTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTCCCCGCTTTTTGCCTGATGCGACGCTGACGCGCCCTACCAGGCCTACAAGACCCGAGCATAGAACCGTAGGACTGATAAGGCGTTCACGCCGCATCCGCCAt < 1:172417/147‑1 (MQ=25) tCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAtt > 1:159153/1‑149 (MQ=255) tCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACACGACCCGAGCACAGAACCGTAGGACGGCTAAGGCGTTCCCGCCCCATACGGCACTccg > 2:234694/1‑147 (MQ=25) tCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAg < 2:269176/123‑1 (MQ=255) tCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAg > 1:269176/1‑123 (MQ=255) tAAATTTGATGCCAGGTGAGGCGGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGc < 1:456982/149‑1 (MQ=255) aaaTTTGAGGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTGGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGcc < 2:330618/149‑1 (MQ=255) tttGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACACAACCGTAGGACGGATAAGTCGTTCACGCCGCATCCGGCATTCAGTGCCTgc > 1:167951/1‑148 (MQ=255) aGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCt > 2:333665/1‑149 (MQ=255) gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCACTGCCTGATGCGCCCCTGa > 2:44254/1‑149 (MQ=255) aGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAGCCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGAcgc < 1:550015/149‑1 (MQ=255) tgttttgttCGTTGGCGGTTTTTGCGTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAg < 1:542351/149‑1 (MQ=255) ttttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGc < 2:345809/149‑1 (MQ=255) gttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGACCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCCTGATGCGACGCGGACGCGTCTTATCAGGCCTAc > 1:264314/1‑149 (MQ=255) ttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCCGGCCTACa > 2:400919/1‑149 (MQ=255) atCGTTGCCACTTTTTGCCTGATGAGCAGCCGACGCGCCTTACCAGGCCTACAAGACCCGAGCACAGAACCGTCGGACGGATAAGGCGTTCACGCCGCACCCGACCTTCACTGCATGATGCGACGCTGCCGCTCCTTATCAGGCCtcaa > 2:362245/2‑146 (MQ=25) gCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTccc < 1:486999/149‑1 (MQ=255) cGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGa > 1:85326/1‑149 (MQ=255) cGCTTTTGGCCGGATGCGGCGTTGGCGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGa < 2:11684/149‑1 (MQ=37) cTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGc < 2:142615/149‑1 (MQ=255) tttttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGca < 1:333665/149‑1 (MQ=255) taagACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGc < 2:560340/119‑1 (MQ=255) taagACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGc > 1:560340/4‑122 (MQ=255) | TCAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCA > NC_000913_3_hsa_tpiA/2118331‑2118609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |