New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	1207790 =	19 (0.570)	11 (0.370)	11/248	1.8	46.0%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_hsa_tpiA	1209619 =	9 (0.300)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

ATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATG  >  NC_000913_3_hsa_tpiA/1209473‑1209764                                                                                                                                                   |                                                                                                                                                  atttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt                                                                                                                                                 >  1:199986/1‑149 (MQ=255)   ttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt                                                                                                                                               <  1:163412/149‑1 (MQ=255)                      cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGACAGACGCAAACTGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                                                                            <  1:573100/149‑1 (MQ=255)                                 actgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc                                                                                                                 >  1:460861‑M2/115‑149 (MQ=255)                                     ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCACCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAACAACACGCAAATgcactca                                                                                                             >  2:135497/1‑143 (MQ=255)                                       tgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt                                                                                                           <  1:447287‑M2/41‑1 (MQ=255)                                          cagAAAAAGCGGCTCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt                                                                                                        <  1:568626/149‑1 (MQ=255)                                                attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt                                                                                                  >  2:169783‑M2/100‑149 (MQ=255)                                                    ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGACATCATTCCTGCTTTTAcct                                                                                              >  2:43569/1‑148 (MQ=255)                                                      caatacccccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcctaaaccaaCTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg                                                                                            <  1:198232‑M2/56‑1 (MQ=255)                                                        ataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg                                                                                          >  1:385736‑M2/92‑149 (MQ=255)                                                            caccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt                                                                                      >  2:426600‑M2/88‑149 (MQ=255)                                                             accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATACCAAGCAAATGGCATCATTCCTCCTTTTACACGGGGGAttt                                                                                     >  2:20191‑M2/87‑149 (MQ=255)                                                                      ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTATCATGCtt                                                                            <  2:365567/149‑1 (MQ=255)                                                                                           tGAAGGCCACGGAACCGGGACACCCACAGGTAATGCAGAAGATTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATca                                                       >  1:84686/1‑149 (MQ=255)                                                                                                   aCGAAAACGGGACCCCACACGGTAATGCATAAGCTTCTCACAAACCACCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATTAATCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                                               <  2:190787/149‑1 (MQ=255)                                                                                                    ttatgtagccgttgctgcattgagttttggtccttttcccaaatcaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                                              <  2:191562‑M2/102‑1 (MQ=255)                                                                                                    taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                                              >  1:277716‑M2/48‑149 (MQ=255)                                                                                                               ttgctgcattgagtcttgccccttctccccaacccaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATACCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGa                                   <  1:20191‑M2/113‑1 (MQ=255)                                                                                                                             tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTACTTTTACCAGGGGGATTTAACATGCTTATTTGCTATGTACGCGTATCAACAAATGACCAGAACCCAGATCTACAACGTAATg                     >  2:52351‑M2/23‑149 (MQ=255)                                                                                                                                        tcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCCTCACTTCGTTGACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgt          >  1:315765‑M2/12‑149 (MQ=255)                                                                                                                                         cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATAACCAGAACACAGATCTACAACGTAATACGATGAAcagtt         >  1:497891‑M2/11‑148 (MQ=255)                                                                                                                                           caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAactgtgta       >  2:390860‑M2/9‑147 (MQ=255)                                                                                                                                             aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAgg     >  2:348154‑M2/7‑149 (MQ=255)                                                                                                                                               ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGACCTGTGCAGGAt   >  2:60440‑M2/5‑149 (MQ=255)                                                                                                                                               ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGAt   >  2:184899‑M2/5‑149 (MQ=255)                                                                                                                                                caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGTATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCAGAACTGTGCAGCATg  >  2:438147‑M2/4‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                  ATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATG  >  NC_000913_3_hsa_tpiA/1209473‑1209764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.