New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 780629	32 (0.760)	4 (0.130) +GTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAA	4/208	4.4	11.5%	noncoding (76/76 nt)	lysT	tRNA‑Lys
	?	NC_000913_3_hsa_tpiA	= 781277	53 (1.260)					intergenic (+55/‑92)	lysY/lysZ	tRNA‑Lys/tRNA‑Lys
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAG  >  NC_000913_3_hsa_tpiA/780484‑780774                                                                                                                                                  |                                                                                                                                                  aatgatGAAATCAGTAATATATGCCGTCATTGACACGGAATATCAAACAAAACGAAAACTACGAAAAACGTTGTCTTTAGCTCATTTGGTAGTTGAGTTGACTTTTAATGAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc                                                                                                                                                <  2:65071/144‑1 (MQ=18)          aTCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTg                                                                                                                                       <  2:66044/149‑1 (MQ=255)                 atatatGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCgg                                                                                                                                <  1:505323/149‑1 (MQ=255)                   atatGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGTCGGAAGCggaa                                                                                                                              >  2:589668/1‑147 (MQ=255)                   atatGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgta                                                                                                                              <  1:219753/149‑1 (MQ=255)                         cgccgTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTaaaa                                                                                                                        >  2:467692/1‑149 (MQ=255)                          gccgTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAAc                                                                                                                       <  1:467692/149‑1 (MQ=255)                                  cACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGa                                                                                                               >  2:204829/1‑149 (MQ=255)                                             aaacaaacCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCAAAGTTGGAAACGGTAGTAAAACGTGCAGGATAACGTTGCAt                                                                                                    >  2:638581/1‑149 (MQ=255)                                                        caggaaggAAAAAGTGGGTAGTTAGCTCAGTTGGTAGAGCAGTCTACTTTTAATCAATTGGTAGCAGGTTCGAATCATGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGcc                                                                                         <  2:299213/142‑1 (MQ=21)                                                             aCGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAACTGCAGTCGGGAGTAAAACGTGAAGGATAACGGTGCATGAGCAACGGCCCGAAg                                                                                    >  1:571379/1‑149 (MQ=18)                                                              cGAGAAAGTGGGTCTGTAGCTTAGGTGGTATAGCAGTTGACTTTCAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAgg                                                                                   <  2:678277/149‑1 (MQ=21)                                                                aaaaaGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGc                                                                                 <  2:528449/149‑1 (MQ=255)                                                                    agggggTCGTTAGCTCAGTTGGTAGAGCAGTTGAATTTTAATCACTCGGTGAAAGGGTCGAAGCCTGCACGACCCATCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCgaga                                                                             <  2:342790/146‑1 (MQ=21)                                                                       gggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTTGTAAAACGTGAAGGATACCGTTGCATGAGCAACGGCCCGTAGGGCgagcgaa                                                                          >  2:693642/1‑145 (MQ=255)                                                                             ttAGCTAAGGTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTTTAATATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAATTCGa                                                                    <  1:106281/149‑1 (MQ=18)                                                                                  tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACAAATCGCCAAGGTGGAAACGGGAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAGGTCGAGTCAt                                                               >  2:628357/1‑149 (MQ=17)                                                                                            gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGc                                                                                          >  2:137367/1‑112 (MQ=255)                                                                                            gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGc                                                                                          <  1:137367/112‑1 (MQ=255)                                                                                             agCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGGGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGAcc                                                    <  1:192980/149‑1 (MQ=255)                                                                                                         ttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGGAGTCGAGTCATCCTGCACGACCCACCACTAACAt                                        >  1:403823/1‑149 (MQ=255)                                                                                                          tAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACAta                                       <  1:204829/149‑1 (MQ=255)                                                                                                                       gCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTgtagta                          >  2:124806/1‑149 (MQ=255)                                                                                                                            ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCAt                                                                                                    <  2:427042/70‑1 (MQ=255)                                                                                                                            ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCAt                                                                                                    >  1:427042/1‑70 (MQ=255)                                                                                                                              cGAATCCTGCACGACACACCAAACGCTAAGGGGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCg                   <  2:48365/149‑1 (MQ=255)                                                                                                                                aaTCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACGTAGTTAGTTGTAGTATCCAGCgta                 >  1:459140/1‑149 (MQ=255)                                                                                                                                   ccTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGGAGGATAACGTTGCATAAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCgtagta              >  1:396454/1‑149 (MQ=255)                                                                                                                                    cTGAACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTAt             <  2:218726/149‑1 (MQ=255)                                                                                                                                            cccACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGAt     >  1:265767/1‑149 (MQ=255)                                                                                                                                             ccaccaATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGAtt    <  1:424062/149‑1 (MQ=255)                                                                                                                                               accaATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTTCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAg  >  1:430082/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  AAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAG  >  NC_000913_3_hsa_tpiA/780484‑780774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.