New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 781277	53 (1.260)	4 (0.130) +TTATCCTTCACGCTTAACATCTGAGTTTGATGTTAAAAC	4/208	4.4	9.0%	intergenic (+55/‑92)	lysY/lysZ	tRNA‑Lys/tRNA‑Lys
	?	NC_000913_3_hsa_tpiA	= 2521328	58 (1.380)					noncoding (76/76 nt)	lysV	tRNA‑Lys
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCATCACCCACCACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCG  >  NC_000913_3_hsa_tpiA/781130‑781425                                                                                                                                                    |                                                                                                                                                     gTCATCACCCACCACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg                                                                                                                                                     >  1:469285/1‑149 (MQ=255)  tcatcaCCCACCACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGc                                                                                                                                                    <  1:308514/149‑1 (MQ=255)         ccaccaCTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACGCAGTTGTTAAGCGTGAAGGATAACGTTGCGCCAGCCACGCCCCGTggg                                                                                                                                             >  1:63602/1‑149 (MQ=14)              acccGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcgag                                                                                                                                        <  1:115127/146‑1 (MQ=255)              acTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcgag                                                                                                                                        >  1:545331/1‑149 (MQ=255)                      cGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaagcga                                                                                                                                <  2:71734/149‑1 (MQ=255)                              cactgtgTAGAGCAGTTGACTTCTAATCAATTGGTCGCAGGTTCGAATCATGTATGTTCCATCAGTTTTAACACCCAACAAAGATTTTAAGCGTGAAGGATATCTTTGCTCCAGCACCGGCTCGTAGGGCGAGCGAAGCGAGTCATCCt                                                                                                                        <  2:642535/143‑1 (MQ=11)                               aGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTCGGGCGAGCGACGCGAGACACCCTg                                                                                                                       >  2:249425/1‑149 (MQ=255)                               aGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTg                                                                                                                       >  2:607519/1‑149 (MQ=255)                                 ttGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCa                                                                                                                     <  2:139238/149‑1 (MQ=255)                                 ttGGTAGAGCAGTCGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCa                                                                                                                     <  1:93335/149‑1 (MQ=255)                                            gTTGATTTTTGATTAATTGGTTGCAGGTTCGAATCCTGCACGACCCAGCAGTTTTAATATCGAACTCAGATGTTAAGCGTGAAGTATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCaa                                                                                                          <  2:391745/149‑1 (MQ=11)                                                 cTTTTAATCAATTGGTCGCAGGCTCGAATCCTGCACGACCCAACAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTa                                                                                                     <  1:449015/149‑1 (MQ=255)                                                   tttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTaaa                                                                                                   <  2:469285/149‑1 (MQ=255)                                                       aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCGACCAGTGTAAACATGAAACTCCGATGTTAAGCGTGAAGGGTAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGAtt                                                                                               >  2:557952/1‑149 (MQ=17)                                                        tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGTAAGCAACGGCGAATCGGACGAGCGAGGCGAGGGATAGAGCACGACCTGCCGTTTTTAAAGCTTg                                                                                              >  2:257470/1‑149 (MQ=11)                                                        tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTg                                                                                              >  2:69557/1‑149 (MQ=255)                                                           aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTTAAGATTggtg                                                                                           <  1:375367/149‑3 (MQ=255)                                                               gTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGCTGCGCCAGCAACGGCCCTTTGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGa                                                                                       <  2:591073/149‑1 (MQ=11)                                                               gTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGa                                                                                       <  2:545331/149‑1 (MQ=255)                                                                  gCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTa                                                                                    <  1:303092/149‑1 (MQ=255)                                                                  gCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGCTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGCCCCACCACTCTTAAACATTGGccacctgtg                                                                                    >  2:326751/1‑142 (MQ=17)                                                                    aGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTaaa                                                                                  <  2:696316/149‑1 (MQ=255)                                                                           aaTCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCttt                                                                           >  1:148531/1‑149 (MQ=255)                                                                             tCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGa                                                                                       <  1:11706/135‑1 (MQ=255)                                                                             tCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGa                                                                                       >  2:11706/1‑135 (MQ=255)                                                                             tCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCa                                                                         <  2:148531/149‑1 (MQ=255)                                                                             tCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCa                                                                         <  2:264700/149‑1 (MQ=255)                                                                              ccggCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAg                                                                        <  1:249425/146‑1 (MQ=255)                                                                              ccTGCAGCACACACCAGTTTTAAGATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAg                                                                        <  1:129705/149‑1 (MQ=255)                                                                              ccTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAg                                                                        <  1:607519/149‑1 (MQ=255)                                                                                   aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAac                                                                   <  1:69557/149‑1 (MQ=255)                                                                                         caccaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCCCGACCCACCAATCTTAAAGATTGGCCCCGAGAAAAAATCTTTCAGGTAACACCCga                                                             >  2:376056/1‑148 (MQ=255)                                                                                           ccaGTTTTAACATCAAACTCAGATGTTAAGCGGGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTAt                                                           <  1:450777/149‑1 (MQ=255)                                                                                           acaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGCCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAACCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACAccccaac                                                           >  2:555226/2‑145 (MQ=255)                                                                                             aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATgg                                                         <  2:707990/149‑1 (MQ=255)                                                                                              gTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATCGGCCGCGAGGAAAAAGCATTAAGGTAACACCCGTATggg                                                        >  1:640116/1‑149 (MQ=21)                                                                                                       tCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTAGCCCCGAGTAAAAGTCTTTCAGGTAACACCCGTATGGGTCCTTAGCt                                               >  2:622240/1‑149 (MQ=255)                                                                                                            cgctgATGTTAAGGGCGAAGCATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGtt                                          <  1:246848/145‑1 (MQ=255)                                                                                                            cTCAGATGTTAAGCGGGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGtt                                          <  2:123388/149‑1 (MQ=255)                                                                                                             tCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTg                                         >  1:346294/1‑149 (MQ=255)                                                                                                              tagttGTTAAGCGTGAAGGATAACGTTGCGCCAGCTACGGTCTGCTGTTCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTgg                                        <  1:137509/145‑1 (MQ=37)                                                                                                                gATGTTAAGCGTGAAGGATAAGGTTGCGCCAGCAACGGCCCGTAGAGCGAGCGAAGCGAGGCATCCTGCACGGCCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTa                                      <  2:266514/149‑1 (MQ=255)                                                                                                                     tAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCa                                 <  1:346654/149‑1 (MQ=255)                                                                                                                           tGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAc                           >  1:538737/1‑149 (MQ=255)                                                                                                                            gAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCATATGGGTCGTTCGCTCAGTTGGTAGAGCAGTTGACt                          >  1:524202/1‑149 (MQ=255)                                                                                                                                      gctgagcCAGCAACGGTCCGTAGGGCGAGCGAAGCGAGTCAACCTGCACCACCGAGCGATCTCACAGATTTGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAt                <  2:63602/144‑1 (MQ=37)                                                                                                                                      gTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGt                                                                      >  1:300126/1‑95 (MQ=255)                                                                                                                                      gTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGt                                                                      <  2:300126/95‑1 (MQ=255)                                                                                                                                       ttGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAtt               >  1:492901/1‑149 (MQ=255)                                                                                                                                           gcCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCCATTGGtt           >  2:442197/1‑148 (MQ=255)                                                                                                                                                 aaCGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGt     <  1:557952/149‑1 (MQ=255)                                                                                                                                                    ggCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTCTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTATTCAATTGGTCGCAGGTTCg  >  1:286346/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GTCATCACCCACCACTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCG  >  NC_000913_3_hsa_tpiA/781130‑781425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.