New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1299498	0 (0.000)	44 (1.070)	41/278	0.1	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913_3_hsa_tpiA	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

TCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTG  >  NC_000913_3_hsa_tpiA/1299354‑1299641                                                                                                                                                  |                                                                                                                                                tcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataa                                                                                                                                             >  2:10093‑M1/1‑145 (MQ=255)          agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                                                                                                                    <  2:246200‑M1/149‑14 (MQ=255)                ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTAGAAGAGGAAATTGCTAAataataatcaattgttaaa                                                                                                                              <  2:704000‑M1/149‑20 (MQ=255)                ttaCAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaa                                                                                                                              <  2:549645‑M1/149‑20 (MQ=255)                   taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTCAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcactttttcattta                                                                                                                           >  2:174476‑M1/1‑127 (MQ=255)                    aaGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTTAAATGATATTATTAATTCCACTGCCTTTGTTAAAGGAAAGTGGTAAataagaatcaattgttaaattat                                                                                                                          >  2:216218‑M1/1‑126 (MQ=255)                       gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaatttattgt                                                                                                                       >  1:408634‑M1/1‑123 (MQ=255)                             cTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattt                                                                                                                 <  1:621974‑M1/149‑33 (MQ=255)                               tAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                                                                                                               <  1:577672‑M1/149‑35 (MQ=255)                                  cTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattttgcattgcacta                                                                                                            >  1:487360‑M1/1‑112 (MQ=255)                                  cTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacta                                                                                                            <  1:388972‑M1/149‑38 (MQ=255)                                        ctcctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGTTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                      <  2:70301‑M1/149‑44 (MQ=255)                                           ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactg                                                                                                   >  1:152686‑M1/1‑103 (MQ=255)                                           ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactg                                                                                                   <  1:10093‑M1/149‑47 (MQ=255)                                                catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttcaattattgtgcatttcactactggaactgtaatc                                                                                              >  1:368272‑M1/1‑98 (MQ=255)                                                catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc                                                                                              <  2:606475‑M1/149‑52 (MQ=255)                                                catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc                                                                                              >  1:368266‑M1/1‑98 (MQ=255)                                                             tCGCCACATCATAATCCTGGGCTTGCTGAA‑TAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGCAAAGTGCTAAataataatccattgttaaattattgtgcattacaccactgcaactgttatcagaaatgatatac                                                                                 <  2:542781‑M1/149‑65 (MQ=255)                                                               gCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAatactacctaagttgtaaattattgtgcatttcactactggaactgtaatcagaaaagatagacat                                                                               >  1:171332‑M1/1‑83 (MQ=255)                                                               gCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactcctggaactgtaatcagaaaagatagaaat                                                                               >  2:242203‑M1/1‑83 (MQ=255)                                                                ccACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg                                                                              >  1:86851‑M1/1‑82 (MQ=255)                                                                 cacaTCATAATTCTTGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgggactgtaatcagaaaagatagacatgc                                                                             <  2:436432‑M1/149‑69 (MQ=255)                                                                 cacaTCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatga                                                                             >  1:541669‑M1/1‑81 (MQ=255)                                                                              tGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagaaatgcttagccaatctct                                                                >  1:404626‑M1/1‑68 (MQ=255)                                                                                ggCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctat                                                              >  1:667543‑M1/1‑66 (MQ=255)                                                                                ggCTTGCTGAA‑GAATAATTGAAATGATATGATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaaacgtacccggtagagatagacatgcttagccaatctctat                                                              <  2:525938‑M1/149‑84 (MQ=255)                                                                                 ggttgcTGAATGATTAATT‑AAATGATATTATTAATTCCACGGTCTTTGGTAGAGGAAAGTGCAAAaaaataatcaattgtgaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatt                                                             <  2:81935‑M1/147‑85 (MQ=255)                                                                                      cTGAA‑GAATAATTGAAATGAGATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaacttattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgatt                                                        <  1:257780‑M1/149‑90 (MQ=255)                                                                                       tGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattg                                                       >  1:491831‑M1/1‑59 (MQ=255)                                                                                        gaa‑gaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattga                                                      >  1:609039‑M1/1‑58 (MQ=255)                                                                                         aa‑gaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTCGTGGTCGTTACGAAatactggccaagcgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaa                                                     >  1:361205‑M1/1‑57 (MQ=255)                                                                                         aa‑gaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaa                                                     <  1:608564‑M1/149‑93 (MQ=255)                                                                                            gaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatt                                                   <  2:609039‑M1/149‑95 (MQ=255)                                                                                                     aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgt                                          <  2:152686‑M1/149‑104 (MQ=255)                                                                                                          atatTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgtt                                     <  1:151313‑M1/149‑109 (MQ=255)                                                                                                            attattAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaa                                   >  2:268509‑M1/1‑39 (MQ=255)                                                                                                             ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                                  >  1:437127‑M1/1‑38 (MQ=255)                                                                                                              tattaATTCCACTGCCATTGGCAGAGGAAAGTGCTAAataataatcaattgttaaaatattgtgcatttcactactgaaactgtaatcagaaaagatagacatgcttagccaatctctatttaatagaattaaaagatgtttgttaaag                                 >  2:643291‑M1/1‑37 (MQ=255)                                                                                                                  aaTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatg                             <  2:86851‑M1/149‑117 (MQ=255)                                                                                                                        aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgca                       >  1:692315‑M1/1‑27 (MQ=255)                                                                                                                          tGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaag                     <  1:277299‑M1/149‑125 (MQ=255)                                                                                                                                   tAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagatt            >  1:416486‑M1/1‑16 (MQ=255)                                                                                                                                    agagGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattc           <  1:336393‑M1/149‑135 (MQ=255)                                                                                                                                           aGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacg    <  1:643291‑M1/149‑142 (MQ=255)                                                                                                                                             tactaAataataatcaattgttaaattattgtgcatttcactactagaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggt  <  2:487360‑M1/147‑144 (MQ=255)                                                                                                                                                  |                                                                                                                                                TCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAA‑GAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTG  >  NC_000913_3_hsa_tpiA/1299354‑1299641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.