New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4606601	NA (NA)	5 (0.120)	5/272	5.1	NA	noncoding (62/92 nt)	REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_hsa_tpiA	= 4606631	NA (NA)					noncoding (92/92 nt)	REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

AAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCG  >  NC_000913_3_hsa_tpiA/4606485‑4606775                                                                                                                                                   |                                                                                                                                                 aaaaaTGTCCCTCAGGAAACTAGCGTGCAGGTATGGTATGCATGCGGGGGCAGATGCCAGATGCGCCGCTGGCGCGGCTTATCTGGCCTACGGAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGacac                                                                                                                                                <  1:257541/149‑1 (MQ=38) aaaaaTGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGGTTTGTAGGTAGGATAAGGCGTTCAAGCAGCATCGGacaa                                                                                                                                                >  1:409056/1‑148 (MQ=38)   aaaTGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACgg                                                                                                                                              <  2:496261/149‑1 (MQ=255)          cATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCgg                                                                                                                                       >  1:594918/1‑149 (MQ=255)          cATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCgg                                                                                                                                       >  1:308940/1‑149 (MQ=255)          cATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGAGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCgg                                                                                                                                       >  1:470187/1‑149 (MQ=255)           aTCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCAGCATGCGGCACGGTATTCGGc                                                                                                                                      >  1:281893/1‑149 (MQ=255)           aTCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGAAGCAAGAGGGTCTGTTCTGGCCTACGAAGCGCTAACGTGCAGGTGTATTAGGTCGGATAAGGCGTTCGCGCCGCACCCGACAGGGTATTTGGc                                                                                                                                      >  1:717185/1‑149 (MQ=255)                      aGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTaa                                                                                                                           <  2:183510/149‑1 (MQ=255)                                    gTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTg                                                                                                             >  2:432032/1‑149 (MQ=255)                                                  gCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGc                                                                                                                <  2:432917/132‑1 (MQ=255)                                                  gCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGc                                                                                                                >  1:432917/1‑132 (MQ=255)                                                  gCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATgg                                                                                               >  1:50658/1‑149 (MQ=255)                                                          caggtgcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATac                                                                                       <  2:713341/149‑1 (MQ=255)                                                            gatgcGCCGCTGGCGCGTCTTATCTGGCCCACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATacac                                                                                     <  1:151117/149‑1 (MQ=255)                                                               gcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCtt                                                                                  >  1:373734/1‑149 (MQ=255)                                                                  aacagtgcgcGTCTTACCTGGCCTACGAATGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGaa                                                                               <  1:132830/143‑1 (MQ=255)                                                                  aCGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGaa                                                                               >  1:289685/1‑149 (MQ=255)                                                                        gcgcGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGGTAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATGCACCTTGAAGCGccc                                                                         >  2:487658/1‑149 (MQ=255)                                                                         cgtgTCGTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCTTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCt                                                                        <  2:461053/146‑1 (MQ=255)                                                                             tCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGttt                                                                    <  1:665654/149‑1 (MQ=255)                                                                             tCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGttt                                                                    >  1:375742/1‑149 (MQ=255)                                                                               ttATCTGGCGTACGAAGGGCTAACGTGAAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTgc                                                                  <  1:60528/149‑1 (MQ=255)                                                                               ttATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGAATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTgc                                                                  <  2:497914/149‑1 (MQ=255)                                                                                    tGGCCTACGAAGGGGTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGAt                                                             <  2:42882/149‑1 (MQ=255)                                                                                    tGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGCTACACCTTGAAGCGCCCTGTTTGCGCGAt                                                             >  2:682356/1‑149 (MQ=255)                                                                                    tGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGAt                                                             <  1:527221/149‑1 (MQ=255)                                                                                       ccTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGCTACGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAc                                                          <  2:520432/149‑1 (MQ=255)                                                                                       ccTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCAc                                                          >  1:75936/1‑149 (MQ=255)                                                                                       ccTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCGTGAAGCGCCCTCTTTGCGCGATCAc                                                          >  2:567899/1‑149 (MQ=255)                                                                                        cTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACt                                                         >  1:692453/1‑149 (MQ=255)                                                                                        cTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACt                                                         >  2:26327/1‑149 (MQ=255)                                                                                            gAAGGGGTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGt                                                     <  2:386942/149‑1 (MQ=255)                                                                                             aaGGGCTAATGTGCAGGTTTTGTAGGGCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTCGAAGCGCCCTGTTTGCGCGATCACTTCGTg                                                    <  1:172743/149‑1 (MQ=255)                                                                                                  cTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGc                                               <  1:369327/149‑1 (MQ=255)                                                                                                       gggCAGTTTGTGTAGGTCGGATAAGGCGTTCACCCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAAt                                          <  2:409056/147‑1 (MQ=255)                                                                                                          cAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGtc                                       <  2:664729/149‑1 (MQ=255)                                                                                                           aGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGtct                                      <  2:50658/149‑1 (MQ=255)                                                                                                           aGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGtct                                      <  1:26327/149‑1 (MQ=255)                                                                                                            ggTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATCCACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGtccc                                     >  2:57666/1‑147 (MQ=255)                                                                                                             gTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACCCGCTATTCGGCGCGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTCTTTGCACGATCACTTCGTGGAAGCCAAATGTCTCa                                    >  2:228368/1‑149 (MQ=39)                                                                                                             gTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCa                                    <  2:75936/149‑1 (MQ=255)                                                                                                             gTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCa                                    >  1:471550/1‑149 (MQ=255)                                                                                                                 tGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATTACTTCGTGGAAGCCAAATGTCTCATCCa                                <  1:401807/149‑1 (MQ=255)                                                                                                                  gTAGGTCGGATCAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAg                               <  1:7008/149‑1 (MQ=255)                                                                                                                       tCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGACGCCAAATGTCCCGTCCAGCACGt                          >  2:199238/1‑149 (MQ=255)                                                                                                                             aaGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAACTGTCTCATCCAGCACGTCCGGAt                    >  2:207379/1‑149 (MQ=255)                                                                                                                             aaGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGAt                    >  1:131443/1‑149 (MQ=255)                                                                                                                             aaGGCGTTCACGCAGCATCCGACACGGTCTTCGGCGAGATAATTAACCTTTCTTCCCCTGGCGGGGCATGATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTGCGTGGAAGCCAAAGGTCTCATCCAGCACTTCCGGAt                    >  2:135793/1‑149 (MQ=255)                                                                                                                              aGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATa                   >  1:217524/1‑149 (MQ=255)                                                                                                                                  gTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGGAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGc               <  2:701978/149‑1 (MQ=255)                                                                                                                                          cgcATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGTTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCGCTTCGTGGCAGCCAAATGTCCCATCCAGCACGTCCCGATAAGGCAGGAAGGc       >  2:285555/1‑149 (MQ=255)                                                                                                                                             aTCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGtt    >  2:306796/1‑149 (MQ=255)                                                                                                                                               ccGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATGATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCg  <  2:692453/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 AAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTTCG  >  NC_000913_3_hsa_tpiA/4606485‑4606775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.