New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 167916	55 (0.980)	7 (0.130)	7/264	5.8	11.8%	coding (433/2244 nt)	fhuA	ferrichrome outer membrane transporter
	?	NC_000913_3_hsa_tpiA	= 167919	53 (1.000)					coding (436/2244 nt)	fhuA	ferrichrome outer membrane transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGAAGTCGGTAAAAGAAGCGCTTAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAATATGGTCAGCAAGCGTCCGACCACCG  >  NC_000913_3_hsa_tpiA/167769‑168057                                                                                                                                                    |                                                                                                                                              ccGAAGTCGATAAAAGAAGCGCTTAGCGACACGCCTGGTGTCGCTGTGGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCa                                                                                                                                              >  2:91227/1‑149 (MQ=255)  cGAAGTCGGTAAAAGAAGCGCTTAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAg                                                                                                                                             <  1:463417/149‑1 (MQ=255)   gAAGGCGGTAAAAGAGGCGCTTAGCGACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATAACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAgg                                                                                                                                            <  2:441652/149‑1 (MQ=255)    aaGTCGGTAAAAGAAGCGCTTAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAggg                                                                                                                                           >  1:657662/1‑149 (MQ=255)       tCGGTAAAAGAAGCGCTTAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCGGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCGGAATAACTATCTGAGTGGCCTGAGGTTGcgcggccg                                                                                                                                        >  1:355641/1‑142 (MQ=255)             acagaagCGCTTAGCTACACGCCGGCTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGCAGCTTGGGCCGTTGAATAATTCCATATTAACTATCTGAATGGCCTGAAGTTGCCCTGCAACTTcag                                                                                                                                  <  1:974187/147‑3 (MQ=255)             aaaGAAGCGCTTAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGccctgc                                                                                                                                          <  2:654110/141‑6 (MQ=255)             aaaGAAGCGCTTAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGccctgc                                                                                                                                          >  1:654110/1‑136 (MQ=255)             aaaGAAGCGCTTAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCACCTTCta                                                                                                                                  >  2:381934/1‑149 (MQ=255)             aaaGAAGCGCCTAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCCCTGCAACTTcag                                                                                                                                  <  2:10521/149‑3 (MQ=255)                   gcgcTTAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGa                                                                                                                            >  2:322003/1‑149 (MQ=255)                     gtttAGCTACAGGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATg                                                                                                                          <  2:424004/147‑1 (MQ=255)                       ttAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCg                                                                                                                        <  1:124804/149‑1 (MQ=255)                             acacGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCAtt                                                                                                                  <  2:77457/149‑1 (MQ=255)                                 gCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGAcc                                                                                                              >  1:59879/1‑149 (MQ=255)                                           tctGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGACTGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTGATTGACCCGTATGTGCt                                                                                                    >  1:384582/1‑149 (MQ=255)                                            ctGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGTAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTg                                                                                                   <  1:552029/149‑1 (MQ=255)                                            ctGTTGGTACGCGTGGCGCATCAAACCCCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTg                                                                                                   <  2:392004/149‑1 (MQ=255)                                                  gTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGACGTTGCAGGGCAACTTCTATAACGATACGGTGATTGGCCCGTATCTGCTGGaaaga                                                                                             >  2:690719/1‑146 (MQ=255)                                                    aCGCGTGGCGCATCCAACACCTATGACCTCCTGATCATACGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACgcgc                                                                                           <  2:941169/149‑1 (MQ=255)                                                     cgcgTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGGTGGTGCAGGGCAACTTCCATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCt                                                                                          <  1:390669/149‑1 (MQ=255)                                                      gcgTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTg                                                                                         >  1:522556/1‑149 (MQ=255)                                                      gcgTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTg                                                                                         >  2:519213/1‑149 (MQ=255)                                                       cgTGGCGCATCCAACCCCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGa                                                                                        <  1:322003/149‑1 (MQ=255)                                                        gTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGaa                                                                                       >  2:511869/1‑149 (MQ=255)                                                              cATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATg                                                                                 <  1:366619/149‑1 (MQ=255)                                                               aTCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTAAGc                                                                                >  1:814546/1‑149 (MQ=255)                                                                   aaCACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCAt                                                                                                                   >  1:762071/1‑110 (MQ=255)                                                                   aaCACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCAt                                                                                                                   <  2:762071/110‑1 (MQ=255)                                                                    acacCTATGACCACCTGAACATTCGCCGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACACGCTGAAATTATGCGTTGc                                                                           >  2:562636/1‑149 (MQ=255)                                                                      acCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGccc                                                                         <  2:59879/149‑1 (MQ=255)                                                                             accaccTGAGCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTcc                                                                  <  2:184096/149‑1 (MQ=255)                                                                                accTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTAGGCGTGGCCCGGTTTCCGTg                                                               >  1:876045/1‑149 (MQ=255)                                                                                  cTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCta                                                                                                                                  >  2:172933/1‑80 (MQ=255)                                                                                  cTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCta                                                                                                                                  <  1:172933/80‑1 (MQ=255)                                                                                   tGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCtt                                                            >  1:7058/1‑149 (MQ=255)                                                                                       cATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACg                                                        <  1:511869/149‑1 (MQ=255)                                                                                        aTTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACgg                                                       >  1:597810/1‑149 (MQ=255)                                                                                            gcgGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTaaa                                                   >  2:796826/1‑149 (MQ=255)                                                                                              ggCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTcc                                                                  <  2:870648/132‑1 (MQ=255)                                                                                              ggCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTcc                                                                  >  1:870648/1‑132 (MQ=255)                                                                                                 tttGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAg                                              >  1:376553/1‑149 (MQ=255)                                                                                                      ggCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCAGTGCTTTACGGTAAAAGCAGTCCTg                                         >  2:363039/1‑149 (MQ=255)                                                                                                               ccAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGt                                >  1:756161/1‑149 (MQ=255)                                                                                                                cAAAGCCAGAATAACTATCTGAATGGCCTGAGGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGCACGCGCTGAAATTCTGCGTGGCCCGGTTTCCGTGCTTTGCGGTAGAAGCAGTCCTGGCGGCCTGtt                               >  1:760447/1‑149 (MQ=255)                                                                                                                     ccAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAata                          >  1:798347/1‑149 (MQ=255)                                                                                                                     ccAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAata                          >  2:689899/1‑149 (MQ=255)                                                                                                                        gAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAATATgg                       <  1:863214/149‑1 (MQ=255)                                                                                                                         aaTAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGAAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTGCGGTAAAAGCAGTCCTGGCGGCCTGTTGAatagtgg                      >  1:70564/1‑145 (MQ=255)                                                                                                                          aTAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAATATGGTc                     <  2:522556/149‑1 (MQ=255)                                                                                                                              cTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAATATGGTCAGCa                 >  2:199134/1‑149 (MQ=255)                                                                                                                               tATCTGAATGGCCTGAAGTTGCAGGTCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTCCTTTCCGGTAAAGGCCGTCCTGCCGGGCGGTTGAATATGGCCAGCag                >  2:180933/1‑148 (MQ=255)                                                                                                                               tATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGt                                                                                                           <  1:388728/58‑1 (MQ=255)                                                                                                                               tATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGt                                                                                                           >  2:388728/1‑58 (MQ=255)                                                                                                                                 tCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTGTACGGTAAAAGCAGTCCTCGCGGCCTGTTGAATATGGTCAGCAAGc              >  2:764706/1‑149 (MQ=255)                                                                                                                                        gggcTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATGGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAATATGGTCAGCAAGCGTCCGac       <  2:567191/146‑1 (MQ=255)                                                                                                                                          ccTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAATATGGTCAGCCAGCGTCCGacca     >  1:534235/1‑149 (MQ=255)                                                                                                                                             gAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAATATGGTCAGCAAGCGTCCGACCACCg  >  1:122210/1‑149 (MQ=255)                                                                                                                                             gAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGACTGTTGAATATGGTCAGCAAGCGTCCGACCACCg  >  1:123017/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                              CCGAAGTCGGTAAAAGAAGCGCTTAGCTACACGCCGGGTGTCTCTGTTGGTACGCGTGGCGCATCCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCTGAAGTTGCAGGGCAACTTCTATAACGATGCGGTCATTGACCCGTATATGCTGGAACGCGCTGAAATTATGCGTGGCCCGGTTTCCGTGCTTTACGGTAAAAGCAGTCCTGGCGGCCTGTTGAATATGGTCAGCAAGCGTCCGACCACCG  >  NC_000913_3_hsa_tpiA/167769‑168057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.