Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,397,381 Δ13,756 bp [ynaJ][ttcA] 15 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1397381 1411136 13756 63 [0] [0] 66 [ynaJ]–[ttcA] [ynaJ],uspE,fnr,ogt,abgT,abgB,abgA,abgR,mcaS,smrA,ydaM,ydaN,fnrS,dbpA,[ttcA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13973800 (0.000)63 (1.100) 55/276 0.1 100% coding (16/258 nt) ynaJ DUF2534 family putative inner membrane protein
?NC_000913 1411137 = 0 (0.000)coding (812/936 nt) ttcA tRNA s(2)C32 thioltransferase, iron sulfur cluster protein

TTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTAACTCATCCAACTGATTTTCATCTTCTTCTGGCTGCCAGCACGCCGGTTGTAGTGGGATCTCTTCGCGATCAAACGCCAGATCACCCCCGTTAACCACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCAGCAATCACCTG  >  NC_000913/1410990‑1411285
                                                                                                                                                   |                                                                                                                                                    
cttccctaactaatcaatgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaacaaatttgtctgcacaaggattacatcatgattatggcgaaacac                                                                                                                                                     >  2:457144‑M2/148‑149 (MQ=255)
cttccctaactaatcaatgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttagataacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacac                                                                                                                                                     >  1:163937‑M2/148‑149 (MQ=255)
  tccctaactaatcaatgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACtt                                                                                                                                                   <  1:172911‑M2/4‑1 (MQ=255)
   ccctaactaatcaatgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTc                                                                                                                                                  <  1:931852‑M2/5‑1 (MQ=255)
       aactaatcaatgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGaa                                                                                                                                              >  1:384751‑M2/141‑149 (MQ=255)
       aactaatcaatgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggaaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGaa                                                                                                                                              <  1:955976‑M2/9‑1 (MQ=255)
         ctaatcaatgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAAcc                                                                                                                                            <  2:384751‑M2/11‑1 (MQ=255)
                atgcgttgattgtaaatccagctaagaggtgaggtttgcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgcttatggcgaaacACTTCAGAACCGTGGGTg                                                                                                                                     >  2:790040‑M2/132‑149 (MQ=255)
                        attgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCttt                                                                                                                             <  1:524750‑M2/26‑1 (MQ=255)
                        attgtaaatccagctaagaggtgaggctttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCttt                                                                                                                             >  1:98550‑M2/124‑149 (MQ=255)
                          tgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGa                                                                                                                           >  1:985720‑M2/122‑149 (MQ=255)
                            taaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaaaACTTCAGAACCGTGGGTAATGCCTTTGaaa                                                                                                                         >  2:885773‑M2/120‑149 (MQ=255)
                                     ctaagaggtgaggctttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAgg                                                                                                                <  2:98550‑M2/39‑1 (MQ=255)
                                        agaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaagcagtacagcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTg                                                                                                             <  1:287199‑M2/42‑1 (MQ=255)
                                         gaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTgg                                                                                                            <  1:913367‑M2/43‑1 (MQ=255)
                                            gtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGaa                                                                                                                    >  1:251680‑M2/104‑138 (MQ=255)
                                            gtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGaa                                                                                                                    <  2:251680‑M2/35‑1 (MQ=255)
                                              gaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATGGAACAGGTAGGTATCg                                                                                                       >  1:59017‑M2/102‑149 (MQ=255)
                                                 gttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatgtgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGcac                                                                                                    >  2:627382‑M2/99‑149 (MQ=255)
                                                  ttttcagagtagaaaaaggtgaaatgtcatggtattgtgacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGcaca                                                                                                   <  2:827329‑M2/52‑1 (MQ=255)
                                                       agagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATc                                                                                                        >  1:326268‑M2/93‑139 (MQ=255)
                                                       agagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATc                                                                                                        <  2:326268‑M2/47‑1 (MQ=255)
                                                         agcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGa                                                                                            <  1:871921‑M2/59‑1 (MQ=255)
                                                         agcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGa                                                                                            <  1:695786‑M2/59‑1 (MQ=255)
                                                           cagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACg                                                                                          >  1:715651‑M2/89‑149 (MQ=255)
                                                                aatggggaaatgtgatggtagtggtacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGcacc                                                                                     <  1:415097‑M2/66‑1 (MQ=255)
                                                                          tgtcatggtattgttgcgtttaggtaacaagaaatgtgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGGCTGTGAAGTCGAACCGGTTGGTTTCGCACCGATGAGACGGCACCCCATACTGCa                                                                           >  2:972066‑M2/74‑149 (MQ=255)
                                                                            tcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATc                                                                         >  1:128473‑M2/72‑149 (MQ=255)
                                                                            tcacggtattgttacgtttaggtaacaagaaatttgtctgcacacagaaatcattttgattatggcgaaacACTTCAGAACCGTCGCTGATGCCTTTGAAATCGAACAGGTTGATATCGCACAGATGCGCCGGCACCACATTCTGCATc                                                                         >  2:427700‑M2/72‑149 (MQ=255)
                                                                              atggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGa                                                                                            >  2:523664‑M2/70‑128 (MQ=255)
                                                                              atggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGa                                                                                            <  1:523664‑M2/59‑1 (MQ=255)
                                                                               tggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATcacg                                                                      >  1:1010225‑M2/69‑149 (MQ=255)
                                                                                ggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCgcgc                                                                     >  1:826592‑M2/68‑149 (MQ=255)
                                                                                       ttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacCTTTCAGAAACGCGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGGACCAAATTCTGCATCGCGCGGAAAAt                                                              >  1:45445‑M2/61‑149 (MQ=255)
                                                                                       ttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGa                                                                                                                           >  1:605984‑M2/61‑88 (MQ=255)
                                                                                       ttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGa                                                                                                                           <  2:605984‑M2/28‑1 (MQ=255)
                                                                                        tacgtttaggtaacaagaaatttgtctgcagaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATc                                                             <  2:339419‑M2/90‑1 (MQ=255)
                                                                                           gtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGtc                                                          >  1:247685‑M2/57‑149 (MQ=255)
                                                                                                ggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGAt                                                     >  1:863514‑M2/52‑149 (MQ=255)
                                                                                                     caagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGcc                                                <  1:151216‑M2/103‑1 (MQ=255)
                                                                                                       agaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCt                                              <  1:376096‑M2/105‑1 (MQ=255)
                                                                                                        gaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTg                                             <  2:985720‑M2/106‑1 (MQ=255)
                                                                                                          aatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGa                                           >  1:974624‑M2/42‑149 (MQ=255)
                                                                                                            tttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCt                                                                              >  1:135271‑M2/40‑112 (MQ=255)
                                                                                                            tttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCt                                                                              <  2:135271‑M2/73‑1 (MQ=255)
                                                                                                                tctgcgccaggataacatcatggttatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATACGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGt                                     >  2:882326‑M2/36‑149 (MQ=255)
                                                                                                                tctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGt                                     >  1:126492‑M2/36‑149 (MQ=255)
                                                                                                                  tgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCGTGGATAACGttt                                   >  2:24876‑M2/34‑149 (MQ=255)
                                                                                                                  tgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGttt                                   >  2:845266‑M2/34‑149 (MQ=255)
                                                                                                                    cacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCtt                                                                                                                              <  2:22533‑M2/25‑1 (MQ=255)
                                                                                                                    cacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCtt                                                                                                                              >  1:22533‑M2/32‑56 (MQ=255)
                                                                                                                    cacaaggattacatcaggattatggcgaaacACTGCAGAACCGTGGGTGATGCCTATGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTAt                                 <  1:903925‑M2/118‑1 (MQ=255)
                                                                                                                     acaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGAt                                          >  2:596858‑M2/31‑139 (MQ=255)
                                                                                                                     acaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGAt                                          <  1:596858‑M2/109‑1 (MQ=255)
                                                                                                                       aaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGca                                                                                                     <  2:780692‑M2/50‑1 (MQ=255)
                                                                                                                       aaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGca                                                                                                     >  1:780692‑M2/29‑78 (MQ=255)
                                                                                                                        agtattacaacatgatgatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATAGAACAGGTTTGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCa                             <  2:989806‑M2/122‑1 (MQ=255)
                                                                                                                            ttacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCa                         >  2:665130‑M2/24‑149 (MQ=255)
                                                                                                                            ttacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTAGATACGCCCTGGATAACGTTTATCCCAGTCa                         >  1:134861‑M2/24‑149 (MQ=255)
                                                                                                                                atcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCa                     >  2:677176‑M2/20‑149 (MQ=255)
                                                                                                                                              gaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCAGCAATc       >  1:824188‑M2/6‑149 (MQ=255)
                                                                                                                                                aacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGtct                                                         >  2:871907‑M2/4‑97 (MQ=255)
                                                                                                                                                aacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGtct                                                         <  1:871907‑M2/94‑1 (MQ=255)
                                                                                                                                                   aCTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCAg            <  2:595924/139‑1 (MQ=255)
                                                                                                                                                   aCTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCAg            >  1:595924/1‑139 (MQ=255)
                                                                                                                                                   aCTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCAGCAATCACCTg  >  2:995835/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
TTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTAACTCATCCAACTGATTTTCATCTTCTTCTGGCTGCCAGCACGCCGGTTGTAGTGGGATCTCTTCGCGATCAAACGCCAGATCACCCCCGTTAACCACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCAGCAATCACCTG  >  NC_000913/1410990‑1411285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: