New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 961051	52 (1.060)	5 (0.110)	5/262	5.9	9.0%	intergenic (+23/‑150)	ycaL/cmk	putative peptidase‑related chaperone/cytidylate kinase
	?	NC_000913	= 961058	52 (1.130)					intergenic (+30/‑143)	ycaL/cmk	putative peptidase‑related chaperone/cytidylate kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTGGCAGCTTTGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGAGATAAA  >  NC_000913/960906‑961199                                                                                                                                                  |                                                                                                                                                     gTTGGCAGCTTTGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGtct                                                                                                                                                   >  2:129999/1‑149 (MQ=255)     gCAGCTTTGAAACACTGGCTAGCCTGGATGCCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGAGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTg                                                                                                                                               <  1:294880/149‑1 (MQ=255)       aGCTTTGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGTGCTGGCCTTATGcc                                                                                                                                             >  2:412461/1‑149 (MQ=255)        gCTTTGAAACGCTGGCTGGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATTAACAGAGCGTGCGCAACACATCCGTGATCGTATCGTCTCTGGTAAGTAAATCATTGTCATTTTTCGGGCTGGTCTTCTGCCa                                                                                                                                            <  2:165539/149‑1 (MQ=255)          tttGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTTTGCCAGc                                                                                                                                          >  1:468465/1‑149 (MQ=255)          tttGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGc                                                                                                                                          >  1:536008/1‑149 (MQ=255)               aaCCCTGGCCAGCCTGGATGGCGGTCCCACCCACTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTCGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCt                                                                                                                                     <  2:512826/149‑1 (MQ=255)                acacTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCta                                                                                                                                    >  1:797486/1‑149 (MQ=255)                   cTGGCTAGCCTGGATGGCGGTCGCACCCACTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATaa                                                                                                                                 >  1:644163/1‑149 (MQ=255)                             tGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATa                                                                                                                       >  1:511918/1‑149 (MQ=255)                                 tGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATc                                                                                                                   >  2:803284/1‑149 (MQ=255)                                     ggTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCa                                                                                                               >  1:843505/1‑149 (MQ=255)                                           aCCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGaa                                                                                                         >  2:606141/1‑149 (MQ=255)                                           aCCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGCCTGGCCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGaa                                                                                                         >  1:259470/1‑149 (MQ=255)                                           aCCCAGGTCATGTTTGCCTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGaa                                                                                                         <  2:843505/149‑1 (MQ=255)                                             ccAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCCTCTTTCGGGCTGGTCTTCTGCCAGCCCCCTATAATTGCGCAATAAATCCCCATCTGGATa                                                                                                       >  1:326706/1‑149 (MQ=255)                                             ccAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGAAATAAATCCCCATCTGAATa                                                                                                       >  2:681524/1‑149 (MQ=255)                                             ccAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCAGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATCAATCCCCATGTGAATa                                                                                                       >  1:326834/1‑149 (MQ=255)                                               tgttcATGTATGCCTCTCCCCCACCATCAACGGTGCTTGCGCTACTCATCCGGTATCCTATCGGCTCTGGTAAGGAAATCATTGTCATCTTTCGGGCTGTTCTTCTGCCAGCCCGTTATAATTGCGCAATAAATCCCCATCTGAATACa                                                                                                     <  2:94529/145‑1 (MQ=255)                                                        ttGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCTCAATAAATCCCCATCTGAATACAGACAAAACt                                                                                            <  1:210478/149‑1 (MQ=255)                                                               tcACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGGCCACCCGCTCTACTTGCGGCATAAATCACCATCTGAATACAGACAAACATGGttttt                                                                                     >  1:309904/1‑149 (MQ=255)                                                               tcACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGttttt                                                                                     >  1:516353/1‑149 (MQ=255)                                                               tcACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGttttt                                                                                     >  1:802761/1‑149 (MQ=255)                                                               tcACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGttttt                                                                                     >  1:450206/1‑149 (MQ=255)                                                                cacccaccATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTg                                                                                    <  2:516353/149‑1 (MQ=255)                                                                  cccaccATCAACAGAGCGTGCGCAACACATCCGTGATCGTAACGCCTCGGGTAAGCAAATCATAGTCATCTTCCGTGCTCGTCTTCTGCCCGCACACCCTAATTGCCACATAAACCCCCATCCGAATACAGACAACACCGGCTCTTGca                                                                                  >  2:740/1‑149 (MQ=255)                                                                    caccaTCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGccca                                                                                >  2:12504/1‑149 (MQ=255)                                                                       caTCAACAGAGCGTGCGCACCACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACaa                                                                             <  2:665602/149‑1 (MQ=255)                                                                       caTCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAACCTGGTTTTTGCACACaa                                                                             >  2:268326/1‑149 (MQ=255)                                                                        aTCAACAGAGGTGGAGCAACTCATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGTGCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATGCATACAAAACTGGTTTTTGCACACAAc                                                                            <  2:847528/149‑1 (MQ=255)                                                                            aCAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACCTTa                                                                        >  2:306841/1‑149 (MQ=255)                                                                             gcgagCGTGCGTGACACATCCGGGTTCGTATCGCCTTGGGGAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTaa                                                                       <  2:39422/147‑1 (MQ=255)                                                                              agagCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAAc                                                                      <  1:306841/149‑1 (MQ=255)                                                                                agCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGa                                                                    <  2:643900/149‑1 (MQ=255)                                                                                       gcAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTCACGATTTGTgg                                                             >  2:722344/1‑149 (MQ=255)                                                                                        cAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGc                                                            <  1:27730/149‑1 (MQ=255)                                                                                             caTCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCgg                                                       <  2:802761/149‑1 (MQ=255)                                                                                                              ccTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCACTTAATCCCCATCTGAATCCAGACAAAACTGGTTTTTGCACACAACGTTAACAATTTGTGCAGTCGGCCGGCAAAATGcgcgcg                                      >  2:458863/1‑149 (MQ=255)                                                                                                                   ggTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTAt                                 <  1:803284/149‑1 (MQ=255)                                                                                                                         taaATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAAtt                                                                                                                               <  1:178568/49‑1 (MQ=255)                                                                                                                         taaATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAAtt                                                                                                                               >  2:178568/1‑49 (MQ=255)                                                                                                                          aaaTCATTGTCATCTTTCGGGCTAGTCTTCTGGCAGCCCGCTGTAGTTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTAGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAAcc                          >  1:685100/1‑148 (MQ=255)                                                                                                                             tCATTGTCATCTTTCGGGCTGGTCTTTTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTa                       <  2:468465/149‑1 (MQ=255)                                                                                                                                   tCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTg                 >  1:719149/1‑149 (MQ=255)                                                                                                                                        tttCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTa            >  2:347130/1‑149 (MQ=255)                                                                                                                                         ttCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTaa           <  2:450206/149‑1 (MQ=255)                                                                                                                                          tCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAg          <  1:129999/149‑1 (MQ=255)                                                                                                                                          gcGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTTGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAg          <  1:659305/148‑1 (MQ=255)                                                                                                                                            tggCTGGTCTTCGGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGga        <  1:69254/148‑1 (MQ=255)                                                                                                                                             ggCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGgag       <  1:268326/149‑1 (MQ=255)                                                                                                                                                 ggTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGAGATaa   >  2:80213/1‑149 (MQ=255)                                                                                                                                                  gTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGATATaaa  >  1:782398/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GTTGGCAGCTTTGAAACACTGGCTAGCCTGGATGGCGGTCGCACCCAGTCCATGTTTGACTCTCACCCACCATCAACAGAGCGTGCGCAACACATCCGTGATCGTATCGCCTCTGGTAAGTAAATCATTGTCATCTTTCGGGCTGGTCTTCTGCCAGCCCGCTATAATTGCGCAATAAATCCCCATCTGAATACAGACAAAACTGGTTTTTGCACACAACGTTAACGATTTGTGGCGTCGGCGCGTATAATGCGCGCGGTTATGTTAACGGTACGCCTGTTTTAAGGAGATAAA  >  NC_000913/960906‑961199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.