New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	47 (0.960)	6 (0.140)	6/246	5.1	13.9%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	1209619 =	33 (0.760)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCG  >  NC_000913/1209471‑1209766                                                                                                                                                     |                                                                                                                                                    gtatttGTCGGATAAGCCTTCGCCAGTTCCTGGTAGTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAc                                                                                                                                                     <  2:597636/148‑1 (MQ=255)   atttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCCGCCGGAGCGGCACCATTTCATTTCAGCCAGCATGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt                                                                                                                                                   <  2:827445/149‑1 (MQ=255)    tttGTCGGATAAGCCTTTGCCAGTTCCGGGGATTCTTCAGCAGAAAAAGCGGCACCATTACATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAGGACCACTGAACCGGGACGCCAACAGGTAATGCAGAGCCTTCTCCCACACCAACGtt                                                                                                                                                  >  2:653595/1‑149 (MQ=255)         cGGATAATCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa                                                                                                                                             <  1:764956/149‑1 (MQ=255)                 ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCCTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGACACGGAACAGGGACACCAACAGGTAATGCATAGCCTTCTCCCAAACCAACCTTTATGAAAATaaag                                                                                                                                     >  2:295359/1‑149 (MQ=255)                   tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGAATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGACACTTCTCCCAAAACACGGTTTATGAAAATgaagaa                                                                                                                                   >  2:552525/1‑149 (MQ=255)                     tGCCATTTCCGGGCATTCTGCAGCAGAAAAAGCGGCACCATTGTATGCCAGCCAGCCTGTTGGCGGAGTGGCCGTAGGTCACGGAACCGTCACTCCAACAGGTAAGGCAGAGCCTTCTCCCAAAGCAGCGTTTATGAAAATGAAGAAAt                                                                                                                                 <  2:286157/149‑1 (MQ=255)                     tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATTAAGaaag                                                                                                                                 >  2:88634/1‑148 (MQ=255)                        cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                                                                              <  1:542069/149‑1 (MQ=255)                            cgcGGGTCTTCTGCTGCAGAAAAAGCGGGACCACGGCATGTGCTCCAGCTCGTTGGCGGAGTGGCTGAAGTCCACGGAACCGTGACACCAACATTTAATGCAGAGCCTTCTCCCCTCCCAACGTTTATGAAAATGAAGAAATAACAAGc                                                                                                                          <  2:382718/147‑1 (MQ=255)                                         cagcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACAAACGCTTATGAAAATGAAGAAATAACAAGCAAAAGGCATAAtt                                                                                                             >  2:649869/1‑149 (MQ=255)                                             agAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGACACGGAAACGGGACACCAACAGGTAATGCAGAGCCTTATCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg                                                                                                         >  2:342020/1‑149 (MQ=255)                                                 aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAACCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                                                                     <  1:568645/149‑1 (MQ=255)                                                        cACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg                                                                                              >  1:523227/1‑149 (MQ=255)                                                             ttGCAGTGCAGCCAGCCTGTTGGCGGAGTGGCGGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt                                                                                         <  2:386130/149‑1 (MQ=255)                                                                  tttGAGCCAGGCTGTGGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                                                    <  2:28607/149‑1 (MQ=255)                                                                  tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGGCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTGCCAGGGGGATTTAAc                                                                                    >  1:291848/1‑149 (MQ=255)                                                                                               aaGGCCACGGAATCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                                       <  1:325863/149‑1 (MQ=255)                                                                                                  gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                                    >  2:472157/1‑149 (MQ=255)                                                                                                    cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg                                                  >  1:509882/1‑149 (MQ=255)                                                                                                     aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                                                 <  2:699597/149‑1 (MQ=255)                                                                                                          aacGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGa                                            <  1:295359/147‑1 (MQ=255)                                                                                                            cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                                               >  2:807582/1‑128 (MQ=255)                                                                                                            cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                                               <  1:807582/128‑1 (MQ=255)                                                                                                                  acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt                                    <  1:476987/149‑1 (MQ=255)                                                                                                                    cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt                                  >  2:448338/1‑149 (MQ=255)                                                                                                                    cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGCATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGCCCAAAACACAGctct                                  >  2:39476/1‑149 (MQ=255)                                                                                                                     aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAAATGCTTATTGGATATTTACGCGTATCAACAAATGACATAAACACAGCTCTa                                 >  2:543148/1‑149 (MQ=255)                                                                                                                     aaCAGATAATCAATAGCCTCATCCCTAAATGACGTTTATCAAAATGAAGAAATAAGAATCAAATGGCATCATTCCTGCTTTTACCTGGTGGATTTAACATTCTTATTGTCTATGTACGCGTATCAACAAATTACCACAACACAGATCTa                                 <  2:714716/149‑1 (MQ=255)                                                                                                                        aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa                              >  2:228598/1‑149 (MQ=255)                                                                                                                          gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGGTTTTACCAGGGGGATTTAACATGCTTATTGGCTGTGTACGCGTATCAACAAATGACCAGAACACAGAACTACAGCg                            >  1:577858/1‑149 (MQ=255)                                                                                                                             aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa                         >  1:757011/1‑149 (MQ=255)                                                                                                                                  tagCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTGAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACTAGAACACAGATCTACAACGTAATgcgc                    <  1:34592/148‑1 (MQ=255)                                                                                                                                       ttCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGCTCTACAACGTAATGCGCTGAAc               >  2:860595/1‑149 (MQ=255)                                                                                                                                       ttCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAAc               <  1:419490/149‑1 (MQ=255)                                                                                                                                           cccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcg                     >  2:678643/1‑139 (MQ=255)                                                                                                                                           cccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcg                     <  1:678643/139‑1 (MQ=255)                                                                                                                                             cAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATCGGCTGAACTGTGCa         >  1:147439/1‑149 (MQ=255)                                                                                                                                                 ccAACGTTTATGAAGATGAAGAAAGAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCGGGAt     >  1:746835/1‑149 (MQ=255)                                                                                                                                                   aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGc   <  1:228598/149‑1 (MQ=255)                                                                                                                                                    gcGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCg  >  1:175915/2‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCG  >  NC_000913/1209471‑1209766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.