New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1237052	63 (1.290)	4 (0.080)	4/268	6.5	6.3%	coding (190/1533 nt)	ycgB	SpoVR family stationary phase protein
	?	NC_000913	= 1237064	58 (1.230)					coding (178/1533 nt)	ycgB	SpoVR family stationary phase protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTAAGCGATACACGGGTTAGAGTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTG  >  NC_000913/1236924‑1237207                                                                                                                                             |                                                                                                                                                gTAAGCGATACACGGGTTAGAGTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGcatcca                                                                                                                                         >  1:131554/1‑149 (MQ=255)    aGCGCTACACGGGTTAGAGTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCcatca                                                                                                                                      <  1:183225/149‑1 (MQ=255)    aGCGATACACGGGTTAGAGTGAATGACGATTTCATAGGCCAGTCCTGGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTGTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCcatca                                                                                                                                      <  1:478198/149‑1 (MQ=255)       gATACACGGGTTAGAGTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGTCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCt                                                                                                                                   <  1:363416/149‑1 (MQ=255)            acGGGTTAGAGTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCt                                                                                                                              >  2:289598/1‑149 (MQ=255)              gggTTAGAGTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGCTAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCCACGCTGGCATAGGCATCCATCACCTGTTCTGa                                                                                                                            >  2:845039/1‑149 (MQ=255)               ggTTAGAGTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAg                                                                                                                           <  2:372683/149‑1 (MQ=255)               ggTTAGAGTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAg                                                                                                                           <  1:289598/149‑1 (MQ=255)                 ttAGAGTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGt                                                                                                                         >  1:797018/1‑149 (MQ=255)                      gTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCa                                                                                                                    <  2:797018/149‑1 (MQ=255)                       ttAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGtt                                                                                                                        >  1:855710/1‑144 (MQ=255)                       ttAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGtt                                                                                                                        <  2:855710/144‑1 (MQ=255)                            gACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGGTATCACTTCaa                                                                                                              >  1:760319/1‑149 (MQ=255)                                    cATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGt                                                                                                        >  2:51790/1‑147 (MQ=255)                                    cATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGt                                                                                                        <  1:51790/147‑1 (MQ=255)                                     aTAGGCCAGTCCTTGCTGACCGTACAAATACAGCCGATCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAAGAGGCATCCATCATCTGTTCTGAGGTGATCACTTCAATCTcgcgcg                                                                                                     >  2:417013/1‑149 (MQ=255)                                      tAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCgg                                                                                                    <  2:613035/149‑1 (MQ=255)                                      tAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGGTCTAAGGTTAGCCCTGCAATCTGGTgggg                                                                                                    >  1:331260/1‑149 (MQ=255)                                         gCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGCCCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAgg                                                                                                                          >  2:306453/1‑124 (MQ=255)                                         gCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAgg                                                                                                                          <  1:306453/124‑1 (MQ=255)                                           cAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCAATTCAATCTGGTGCGggtagg                                                                                               >  2:452531/1‑149 (MQ=255)                                            aGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGggtaggt                                                                                              >  2:101188/1‑149 (MQ=255)                                            aGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGggtaggt                                                                                              <  2:9778/149‑1 (MQ=255)                                                cTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATcc                                                                                          <  1:503962/149‑1 (MQ=255)                                                   cttgcccGTGCTTATACAGCTGTTCATTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCTTGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGc                                                                                       <  1:186224/144‑1 (MQ=255)                                                     tGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACt                                                                                                                  <  2:83324/120‑1 (MQ=255)                                                     tGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACt                                                                                                                  >  1:83324/1‑120 (MQ=255)                                                        ccGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTa                                                                                  <  1:59581/149‑1 (MQ=255)                                                          gTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTaga                                                                                >  2:561298/1‑149 (MQ=255)                                                           tGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCTGTTagat                                                                               >  2:821362/1‑148 (MQ=255)                                                                    aGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCAc                                                                      >  1:110994/1‑149 (MQ=255)                                                                    aGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCAc                                                                      >  1:64232/1‑149 (MQ=255)                                                                      ccGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCAccc                                                                    <  1:34058/149‑1 (MQ=255)                                                                             gTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTAt                                                             <  1:101188/149‑1 (MQ=255)                                                                              tctcGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAgg                                                                                                                          >  1:484423/1‑87 (MQ=255)                                                                              tctcGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAgg                                                                                                                          <  2:484423/87‑1 (MQ=255)                                                                                   aTAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGc                                                       <  1:810250/149‑1 (MQ=255)                                                                                   aTAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATATCTGc                                                       >  1:834401/1‑149 (MQ=255)                                                                                      aaCTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAg                                                    >  1:141657/1‑149 (MQ=255)                                                                                        cTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAgg                                                                                                                          <  1:52299/77‑1 (MQ=255)                                                                                        cTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAgg                                                                                                                          >  2:52299/1‑77 (MQ=255)                                                                                         tttttACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATa                                                 >  1:630479/1‑149 (MQ=255)                                                                                               ccGAATGACCAGTGCGTATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATc                                           <  1:545496/149‑1 (MQ=255)                                                                                                 gAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGAAAAACATCca                                         >  1:691018/1‑149 (MQ=255)                                                                                                     gccacgTGCGGATAGTTAAATCGGATGCCGGCGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAAGCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAATCATCcagcag                                     <  1:840200/144‑1 (MQ=255)                                                                                                       ccAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTCCCAGATAAACATCCAGCAGGt                                   >  1:749306/1‑149 (MQ=255)                                                                                                        cAGTGCGGATAGGTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTTGTGCCGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTc                                  <  1:267147/149‑1 (MQ=255)                                                                                                            gCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAGCATCCAGCAGGTCGAAc                              <  2:321883/149‑1 (MQ=255)                                                                                                               gATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGATATCACATCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGACCGTc                           <  2:657900/149‑1 (MQ=255)                                                                                                               gATAGGTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTc                           <  2:834401/149‑1 (MQ=255)                                                                                                                   gTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGt                       >  1:184706/1‑149 (MQ=255)                                                                                                                    ttAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTc                      <  1:341606/149‑1 (MQ=255)                                                                                                                    ttAATTGGCATGCCGAAGCTGGAGTATGCACCCATCATCGGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTc                      <  1:230659/149‑1 (MQ=255)                                                                                                                             aTGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCAt              >  1:804104/1‑148 (MQ=255)                                                                                                                             aTGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCAt              <  2:804104/148‑1 (MQ=255)                                                                                                                                 cGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTc         >  2:615364/1‑149 (MQ=255)                                                                                                                                        ggAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACgtg  >  1:752139/1‑149 (MQ=255)                                                                                                                                        ggAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTATATCTGGCAAGCGGGCTTTTACGGTCGGTAGAGTTTCGCCACCCGGTCTAGCGCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACgtg  <  2:184706/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                GTAAGCGATACACGGGTTAGAGTTAATGACGATTTCATAGGCCAGTCCTTGCTGACCGTGCTTATACAGCCGTTCAGTCTCGATAAACTTTTTACCGAATGACCAGTGCGGATAGTTAATTGGCATGCCGACGCTGGAGTAGGCATCCATCATCTGTTCTGAGGTTATCACTTCAATCTGGTGCGGGTAGGTATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTG  >  NC_000913/1236924‑1237207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.