| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,397,381 | Δ13,756 bp | [ynaJ]–[ttcA] | 15 genes [ynaJ], uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, ydaM, ydaN, fnrS, dbpA, [ttcA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1397381 | 1411136 | 13756 | 47 [0] | [0] 47 | [ynaJ]–[ttcA] | [ynaJ],uspE,fnr,ogt,abgT,abgB,abgA,abgR,mcaS,smrA,ydaM,ydaN,fnrS,dbpA,[ttcA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1397380 | 0 (0.000) | 46 (0.950) | 44/276 | 0.2 | 100% | coding (16/258 nt) | ynaJ | DUF2534 family putative inner membrane protein |
| ? | NC_000913 | 1411137 = | 0 (0.000) | coding (812/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein | |||||
CTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTAACTCATCCAACTGATTTTCATCTTCTTCTGGCTGCCAGCACGCCGGTTGTAGTGGGATCTCTTCGCGATCAAACGCCAGATCACCCCCGTTAACCACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCAGCAATCACCT > NC_000913/1410989‑1411284 | ccttccctaactaatcaatgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaaca < 1:792746‑M2/1‑1 (MQ=255) cttccctaactaatcaatgcgttgattgtaaatccagcgaagaggggagggggtcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaaaaaatttgtctgcacaaggattacatcatgattatggcgaaacac > 2:532435‑M2/148‑149 (MQ=255) gtccctaactaatcaatgcgttgattgtaaagccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACt < 1:382671‑M2/3‑1 (MQ=255) ctaactaatcaatgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAg > 2:721622‑M2/143‑149 (MQ=255) tcaatgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTgg > 2:528022‑M2/135‑149 (MQ=255) caatgcgttggtgggaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgcctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTggg < 2:101826‑M2/16‑1 (MQ=255) atgcgttgattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTg > 1:448828‑M2/132‑149 (MQ=255) gattgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttatgtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCtt > 2:840181‑M2/125‑149 (MQ=255) attgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACtt < 2:549338‑M2/4‑1 (MQ=255) attgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACtt > 1:549338‑M2/124‑127 (MQ=255) attgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCttt < 2:663436‑M2/26‑1 (MQ=255) ttgtaaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACAGTGGGTGATGCctttc > 1:683200‑M2/123‑148 (MQ=255) taaatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGaaa < 1:825444‑M2/30‑1 (MQ=255) aaatcccgctaagaggggaggttttcagagcagacaacggtgaaatggcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAAt < 2:718073‑M2/31‑1 (MQ=255) aatccagctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATc > 1:135127‑M2/118‑149 (MQ=255) cagacctaagaggtgaggttttcagagcagacaacagtgaaatttcatggtattgttacgtgtaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGa > 2:753809‑M2/116‑149 (MQ=255) agctaagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACa < 2:448828‑M2/37‑1 (MQ=255) taagaggtgaggttttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGt < 1:721622‑M2/40‑1 (MQ=255) ttcagagcagacaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGa < 1:496886‑M2/54‑1 (MQ=255) gcagacaacggtgaaatgtcatggtattgttacgtttaggtaacacgaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGAc > 1:684691‑M2/90‑149 (MQ=255) acaacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGca > 1:606120‑M2/86‑149 (MQ=255) caacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGcac < 1:528022‑M2/65‑1 (MQ=255) aacggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACCGGTTGGTATCGCACAGATGCGACGGcacc > 2:505408‑M2/84‑149 (MQ=255) ggtgaaatgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCTACGGACCcaca > 2:561308‑M2/81‑149 (MQ=255) ggtgaaatgtcatgatatttttacgtttaggtaacaagaaatttgtctgcacaaggattacatgatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGCTGGTATCGCACAGATGCGACGGCACcaca < 2:781104‑M2/69‑1 (MQ=255) tgtcatggtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTGCAGAACCGTGGGTGATGGCTTTGAAATCGAACAGATTGGTATCGGCCAGGTGCGCCGGGAccacattacgca > 1:181149‑M2/74‑144 (MQ=255) tggtattgttacgtttaggtaacaagaaatttgtctgcacaagcatatcatcatgattatggtgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATGGAACAGGTTGGTATCGCGCAGATGCGACGGCACCACATTCTGCATcgcg > 1:848859‑M2/69‑149 (MQ=255) gtattgttacgtttaggtaacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCt > 1:586919‑M2/67‑149 (MQ=255) ggtaacaagtaatttgtctgcacaaggattacatcatgatgatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTAGCGCACATATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGAt < 2:117035‑M2/98‑1 (MQ=255) aacaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACg > 1:3723‑M2/49‑149 (MQ=255) acaagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGc < 1:861431‑M2/102‑1 (MQ=255) aagaaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACCGGTTGGAATCGCACAGATGCGACGGCACCACCTGCCGCATCGCGCTGAACATCGTCTCGATACGccc > 2:214345‑M2/46‑149 (MQ=255) aaatttgtctgcacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCACTACTCCCtgt > 2:75184‑M2/43‑148 (MQ=255) tgtcgtcacaaggattacaacatgattatggcgaaacACTTCAGAACGGTGGTTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAAc < 1:549260‑M2/112‑1 (MQ=255) gtcaacacaacgattacctcatgattaaggcgaaacACGTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACg < 1:840181‑M2/113‑1 (MQ=255) cacaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTAt < 2:3723‑M2/118‑1 (MQ=255) acaaggattacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATGCGCCCTGGATAACGTTTATc > 1:653831‑M2/31‑149 (MQ=255) ttagatcatgattagggcgaaacACGTCAGAACCGTGGGTGATGCCTTTGAAGTCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCa < 2:92139‑M2/126‑1 (MQ=255) ttacatcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGACTCGATACGCCCTGGATAACGTTTATCCCAGTCa > 1:330988‑M2/24‑149 (MQ=255) tacaccatgattatggcgaaacACTTCAGAGCCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGAGGCGACGGCACCACATTCTGCATCGCGCGGAACATCGCCTCGATACGCCCTGGATAACGTTTATCCCAGTCAc < 2:426077‑M2/127‑1 (MQ=255) atcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGTTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCCATACGCCCTCGATAACGTTTATCCCAGTCacgac > 2:167160‑M2/20‑147 (MQ=255) tcatgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCaa > 2:217942‑M2/19‑149 (MQ=255) atgattatggcgaaacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTACCGATACGCCCTGGATAACGTTTCTCCCAGTCCCGCACCa > 1:807441‑M2/17‑149 (MQ=255) tatggcgaaacACTTCAGAACCGTGGGTGACGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATGCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCa < 2:768030‑M2/138‑1 (MQ=255) aacCCTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACCGGTTGGTATCGCACAGATGCGACGGCCCCACATTCTGCATCGCACTGAACAGCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCAGCAATCAc < 1:75184‑M2/146‑1 (MQ=255) aacACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATACCGTTTATCCCAGTCACGCAACATGTCAGCAATCAc > 1:357215‑M2/4‑149 (MQ=255) cACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCAGCAATCACCt < 1:753809‑M2/148‑1 (MQ=255) | CTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTAACTCATCCAACTGATTTTCATCTTCTTCTGGCTGCCAGCACGCCGGTTGTAGTGGGATCTCTTCGCGATCAAACGCCAGATCACCCCCGTTAACCACTTCAGAACCGTGGGTGATGCCTTTGAAATCGAACAGGTTGGTATCGCACAGATGCGACGGCACCACATTCTGCATCGCGCTGAACATCGTCTCGATACGCCCTGGATAACGTTTATCCCAGTCACGCAACATGTCAGCAATCACCT > NC_000913/1410989‑1411284 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |