New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3946053	9 (0.080)	25 (0.230)	12/288	9.0	74.1%	noncoding (2350/2904 nt)	rrlC	23S ribosomal RNA of rrnC operon
	?	NC_000913	= 3946069	NA (NA)					noncoding (2366/2904 nt)	rrlC	23S ribosomal RNA of rrnC operon
Rejected: Coverage evenness skew score above cutoff.

CGTGGACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3945903‑3946053 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAA  <  NC_000913/3946069‑3945922                                                                                                                                                                                                                                                                                                             CGTGGACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACT                                                                                                                                                        <  1:1475869/149‑1  ccGGACCCGTGAGCCGGGTGGCGGACAGTGGCTGGTGGGGAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTG                                                                                                                                                       <  2:846635/147‑1   TGGACCCGTGATCCGGGTTTCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTACTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAATCCAGCTTGACTGC                                                                                                                                                      <  2:449620/149‑1                    TTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCG                                                                                                                                     <  2:100549/149‑1                     TGCGGCCAGTGTCGGGGGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGC                                                                                                                                    <  1:71691/149‑1                      GCGGACAGTGTCTTGGGGGAAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGGTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCA                                                                                                                                   <  2:858972/149‑1                      GCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCA                                                                                                                                   <  1:58804/149‑1                      GCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCA                                                                                                                                   <  2:353715/149‑1                      GCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCA                                                                                                                                   <  2:750523/149‑1                      GCGGACAGTGTCTGGGGGGGAGTTTGACTGGGGCGGGCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCA                                                                                                                                   <  1:1860552/149‑1                      GCGGACAGTGGCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCA                                                                                                                                   <  1:87734/149‑1                      GCGGACAGTGGCTGGGGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTACCGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCA                                                                                                                                   <  2:319574/149‑1                       CGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAG                                                                                                                                  <  1:1523243/149‑1                           caggggCTGGTGGGGACTTTGACTGGGGCGGTCTCCTCCTAACGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAA                                                                                                                              <  1:443421/143‑1                           aAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGTAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGTATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAA                                                                                                                              <  2:1133438/148‑1                           CAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAA                                                                                                                              <  2:1405508/149‑1                           CAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAA                                                                                                                              <  2:1773508/149‑1                            AGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAG                                                                                                                             <  2:1194778/149‑1                            AGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAG                                                                                                                             <  2:615248/149‑1                             GTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAGC                                                                                                                            <  1:1427006/149‑1                             GTGTCTGGGGGGTAGTGTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAGC                                                                                                                            <  1:76894/149‑1                             GTGTCTGGGGGCTAGATAGACTGGGTCTGTCTCCTCCTAAAGAGAAACGGTGGAGCACGAAGGTTGGCTATTCCTCGGCGGACATCAGGAGGTTAGTGCAATTGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAGC                                                                                                                            <  2:1240136/149‑1                              TGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAGCT                                                                                                                           <  1:896698/149‑1                               GTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAGCTG                                                                                                                          <  1:1702153/149‑1                               GTCTGGTGGGAAGTTTGACTCGCGCGGTCTCCTCCAAACGAGTAACGGAGGAGCACGAAGGATGGCTAATCCTGGTCGGACCTCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAGCTG                                                                                                                          <  1:231331/149‑1                                         TAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTTACGGAGGAGCACGAAGGGTGGCTAATCCTGGTCGGACATCAGGATGTTTGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCA                                                                                                                <  1:1803379/149‑1                                                                                                          TCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGG                                                                                                                         >  2:1242335/1‑75                                                                                                          TCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGG                                                                                                                         <  1:1242335/75‑1                                                                                                                                                    CTGCTCGCGCGGTCACGCTCGCAGTCAAGCTGGGTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTCCTCTTTAGGAGGAGACCGCCCCAGTCTATCTACCCACCAGCGCCTGTCCG     >  1:1631532/1‑149                                                                                                                                                    CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCG     <  2:966672/149‑1                                                                                                                                                    CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCG     <  2:755047/149‑1                                                                                                                                                    CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCG     <  2:1616528/149‑1                                                                                                                                                    CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCG     >  1:1649465/1‑149                                                                                                                                                    CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCG     >  1:1299282/1‑149                                                                                                                                                    CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTGTAGGAGGAGCCCGCCCCAGTCACACTACGCACCAGCCACTGTCCG     >  1:1753296/1‑149                                                                                                                                                    CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGACAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCGCCAGTCAGACTACCGACCAGACCCTGTCCG     >  1:1003402/1‑149                                                                                                                                                     TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTACGCTCCTGATGACCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGC    <  2:175328/149‑1                                                                                                                                                     TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGC    >  2:1573006/1‑149                                                                                                                                                     TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGC    <  2:1286580/149‑1                                                                                                                                                     TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGC    <  1:641052/149‑1                                                                                                                                                     TGCTCGCGCCGTCACGCTCGCAGTCAAGCGGGCTTAAGCCATTGCACTAACCTCCTGATGTCCGACCAGGATAAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACAACCCACCAGACACTGTCCGC    <  2:1408689/149‑1                                                                                                                                                      GCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCA   >  1:951398/1‑149                                                                                                                                                       CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGCCCGCCCCAGGCAAACTCCCCACCAGCCCCGGTCCGCAc  >  2:1702061/1‑148                                                                                                                                                       CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAA  >  2:1577715/1‑149                                                                                                                                                       CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGGTACTCTTTAGGAGGAGACCGCCCCAGTCAAGCTACCCACCAGACACTGTCCGCAA  >  1:1063910/1‑149                                                                                                                                                                                                                                                                                                             CGTGGACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3945903‑3946053 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAA  <  NC_000913/3946069‑3945922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.