New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4040776	32 (0.710)	6 (0.140)	6/266	4.7	14.1%	intergenic (+140/+130)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
	?	NC_000913	= 4171901	43 (1.020)					intergenic (+145/‑156)	rrfB/murB	5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGG  >  NC_000913/4171755‑4172047                                                                                                                                                    |                                                                                                                                                   aTCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CACCGCCCCGCCGAGTGGCGGGCCGGAccc                                                                                                                                                  >  1:348063/1‑147 (MQ=11)  tCAAATACAACGAAAGACTCAGTCGAAAGACTGGGCCTTTCGTATTATCTCTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAGAGGCCCGGGGGGTGGCGGGCAGGAcgcc                                                                                                                                                 >  2:85059/1‑149 (MQ=11)   cAAATAAAACGAAAGGCTTAGTCGAAAGACTGGGCCGTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACACT‑CGCAGTGATCGGCCCGGAGGGTGGCGGGCAGGAcgccc                                                                                                                                                <  2:752399/149‑1 (MQ=11)    aaaTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAACTCCGCCGGGAGCGGATTTGACCGTTGCGAAG‑CAACGGCCCGGAGGGGGGCGGGCAGGCcgcccg                                                                                                                                               >  2:625795/1‑149 (MQ=255)             gAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGCACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCCTAAACt                                                                                                                                      >  2:540010/1‑149 (MQ=17)                 ggCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGGTGATTTTAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCa                                                                                                                                  <  2:324233/149‑1 (MQ=12)                  gCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAg                                                                                                                                 <  2:70575/149‑1 (MQ=32)                    tCAGTCGAAAGACTGGGCCTTACGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGc                                                                                                                               >  2:268796/1‑149 (MQ=17)                          gAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCaac                                                                                                                         >  2:676843/1‑148 (MQ=14)                           aaaGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAAt                                                                                                                        >  1:135447/1‑149 (MQ=11)                                                                 gAACGCGCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGt                                                                                  <  2:607566/149‑1 (MQ=14)                                                                   aCGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGttt                                                                                <  2:135447/149‑1 (MQ=32)                                                                      ctctCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTa                                                                             <  2:254694/149‑1 (MQ=35)                                                                         tcCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACaa                                                                          >  2:92957/1‑149 (MQ=38)                                                                          ccTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACaaa                                                                         <  2:582067/149‑1 (MQ=38)                                                                          ccTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACaaa                                                                         <  1:531267/149‑1 (MQ=38)                                                                          ccTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACaaa                                                                         <  2:636829/149‑1 (MQ=38)                                                                                tAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CACCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTc                                                                   >  2:220053/1‑149 (MQ=255)                                                                                  ggACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCt                                                                 <  1:268796/149‑1 (MQ=255)                                                                                    aCAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTgt                                                               >  1:388534/1‑149 (MQ=255)                                                                                    aCAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTgt                                                               >  2:348179/1‑149 (MQ=255)                                                                                           cgccgGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCata                                                        >  2:276523/1‑149 (MQ=255)                                                                                               gggAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTATCGTCATATCTa                                                    >  1:68333/1‑149 (MQ=255)                                                                                                  ggCGGATGTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACCCCGGCCAGTAACTGCCAGGCATCAAATCAAGCAGAAGGCCATCCTGACGGATGGCCTCTTTGCGTTTCTACAACCTCTTCCTGTCGTCATATCTTCaa                                                 <  2:718842/148‑1 (MQ=17)                                                                                                   gCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAg                                                >  1:320564/1‑149 (MQ=255)                                                                                                         ttGAACGGTGCTAAG‑TAACGGGCGGGGGGGTGGCGGGCAGGACTCTCGCCATAAACTGGCAGGCATCAAATTAAGCAGAAGGGCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATcc                                          <  2:82960/149‑1 (MQ=18)                                                                                                          tGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCGGTCTCCCTCTTCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTGGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATccc                                         <  1:540010/149‑1 (MQ=18)                                                                                                           gAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATcccc                                        <  1:6930/149‑1 (MQ=255)                                                                                                            aaCGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATccccc                                       <  1:276523/149‑1 (MQ=255)                                                                                                             aCGGTGCGAGG‑CACGGGCCCGGCGGGCGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGAGGGTCTTTTTGCTTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATcccccc                                      <  2:714457/149‑1 (MQ=18)                                                                                                               gTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCcac                                    >  1:684306/1‑149 (MQ=255)                                                                                                                     aaG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATAc                              >  1:374262/1‑149 (MQ=255)                                                                                                                         cAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGt                           <  1:182903/149‑1 (MQ=255)                                                                                                                         cAACGGCCCGGAGGGTGCCAGGCAGCAACCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATAGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGt                           <  2:480164/149‑1 (MQ=25)                                                                                                                               cccGGAGGGGGGCGGGCAGGACGCACGCCAACACCTGCGCGGACTCAATTTAAGCACAAGACGATCTTCAGATATGCTCTGTTGGCGGTGCGACATACTCTGCCTGGCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTa                     <  2:382328/149‑1 (MQ=255)                                                                                                                                ccGGAGGGGGGGGGGCAGGACGCCCGCCATAAACTGCCAGGCAGCAAATTAAGCAGAAGGCCATCCTGACGGATGGTCTTGTTGCGTTTCTACCAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAg                    <  2:3541/149‑1 (MQ=25)                                                                                                                                 cGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGc                   <  1:451018/149‑1 (MQ=255)                                                                                                                                    aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTc                <  2:60557/149‑1 (MQ=255)                                                                                                                                         ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCCACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGtttt           <  1:92957/149‑1 (MQ=255)                                                                                                                                          gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCCCAGATACGGTAAACTAGCCTCGttttt          >  1:698338/1‑149 (MQ=255)                                                                                                                                            gggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGc        <  1:651722/149‑1 (MQ=255)                                                                                                                                                gggACGCCCGACATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCAAATCTAATAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCa    <  2:129711/148‑1 (MQ=255)                                                                                                                                                acgACGCCCGCAATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCCGACGGATGGCCTTTTTGCGTTTCCACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCa    <  2:1848/147‑1 (MQ=255)                                                                                                                                                  gACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTaaa                        >  2:650808/1‑127 (MQ=255)                                                                                                                                                  gACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTaaa                        <  1:650808/127‑1 (MQ=255)                                                                                                                                                  gACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAgg  >  1:675420/1‑149 (MQ=255)                                                                                                                                                  gACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAgg  >  1:226581/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG‑CAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCCCCCACAGATACGGTAAACTAGCCTCGTTTTTGCATCAGG  >  NC_000913/4171755‑4172047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.