New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	805788 =	NA (NA)	3 (0.080) +TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAG	3/192	5.8	6.9%	intergenic (+24/+210)	ybhJ/ybhC	aconitase family protein/acyl‑CoA thioesterase, lipoprotein
	?	NC_000913	= 4153628	59 (1.120)					noncoding (282/346 nt)	REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCAT  >  NC_000913/4153488‑4153775                                                                                                                                             |                                                                                                                                                    gcAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGc                                                                                                                                             >  1:646106/1‑149 (MQ=39)  gcaGTATCGCATCCGACATTATTGCGGCATTGGGGTTTGGGAATATTGCCGGATGCGGTGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCg                                                                                                                                            <  1:486149/147‑1 (MQ=11)  cAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCg                                                                                                                                            <  2:646106/149‑1 (MQ=38)        tCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGGTAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTg                                                                                                                                      >  1:395090/1‑149 (MQ=255)           cATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAg                                                                                                                                   >  2:527695/1‑149 (MQ=38)           cATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTGTGAGGCACTGTAGGGCGGATAAGATGCGCAAGCATCGCAGCCCACATTATTGCGGCACTggtg                                                                                                                                   >  2:876927/1‑147 (MQ=11)             tCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCTCTGGAGtt                                                                                                                                 >  2:504251/1‑149 (MQ=38)              ccGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGttt                                                                                                                                <  2:395090/149‑1 (MQ=37)                gACATTATTGCGGCACTGGAGTGTGGCAACAGTGCCGGATGCGGCGCGAGCGACTTATCCGGCCTACGGTCGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTgg                                                                                                                              <  1:844355/149‑1 (MQ=255)                 atatttttGCGGTACGGCAGCTTGGCAAAAGTGCCGGATGCGGCGCGCGCGCCTTATCCGGGCTACGGTTGGGAACCGATTGAGTCAGTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGc                                                                                                                             <  2:197633/147‑1 (MQ=11)                   attattGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCaa                                                                                                                           >  2:159584/1‑149 (MQ=39)                          cGGGACTTGACTTTGGCAACAGTGCCGGGTGCGGCGCGAGCGCCATAGCCGGCCCACGGTTGGGCATCGTTTGAGCCGCTGTAGGTCGGATAAGATGCGCCAGGATCGCATCCGAAATTATTGCTTTTTTGGAGTTTGGCAACAGCGcc                                                                                                                    <  2:315564/149‑1 (MQ=255)                              aCTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTCTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCGTCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGAt                                                                                                                >  2:905551/1‑149 (MQ=255)                                tGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATgc                                                                                                              >  1:916462/1‑149 (MQ=255)                                     tttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGgcgc                                                                                                         <  1:37231/149‑1 (MQ=40)                                                 gCCGGAGGCGGCGCGAGCGCCTTATCCGGCTCAGGGTTGGGCATCGTTTGGGTCACTGTAGGTCGGATAGGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATc                                                                                             <  2:84477/149‑1 (MQ=14)                                                   cGGATAAGGCGCTCGCGCCGCATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCg                                                                                           >  2:889426/1‑149 (MQ=14)                                                     gATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGGAGCGTTTGAGTCAGTGTAGGTCGGGGAAGATGCGCCAGCATCGCATCAGACATTATTGCGGCACTGGAGATTGGCAACAGCGCCCGATGCGGCGGGAGCGCCTTCTCCGGc                                                                                         >  2:657729/1‑149 (MQ=14)                                                          ggcgCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACg                                                                                    >  1:345470/1‑149 (MQ=255)                                                           gcgcGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGt                                                                                   >  1:391569/1‑149 (MQ=255)                                                               ggtccccTTATCCTCCCTACGGTTGGGCATCGGTTGAGTCAGTGTAGGGCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTa                                                                               <  1:876927/144‑1 (MQ=14)                                                                    ccTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGcc                                                                          >  2:60081/1‑149 (MQ=255)                                                                     cTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAGGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCa                                                                         >  2:283558/1‑149 (MQ=255)                                                                     cTTATCCGGCCTACGGTTGGGCATCATTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATg                                                                                                               <  2:832051/111‑1 (MQ=255)                                                                     cTTATCCGGCCTACGGTTGGGCATCATTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATg                                                                                                               >  1:832051/1‑111 (MQ=255)                                                                      ttATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAg                                                                        >  2:480498/1‑149 (MQ=255)                                                                           cGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCaaaa                                                                   >  1:663352/1‑149 (MQ=255)                                                                                   ggTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGaa                                                           >  1:113570/1‑149 (MQ=255)                                                                                     ttGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGc                                                                                                                                             <  2:193939/65‑1 (MQ=255)                                                                                     ttGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAAtt                                                         >  1:208238/1‑149 (MQ=255)                                                                                         gCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGACACTGGAGTTTGGCAACAGCGCCGGCTGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCt                                                     >  2:561052/1‑149 (MQ=255)                                                                                           aTCGTTTGAGTCAGTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTgg                                                   <  1:781329/149‑1 (MQ=255)                                                                                           aTCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACg                                                                                    <  1:528854/116‑1 (MQ=40)                                                                                           aTCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACg                                                                                    >  2:528854/1‑116 (MQ=255)                                                                                            tCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTggg                                                  >  1:767388/1‑149 (MQ=255)                                                                                             cGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAc                                                                                                                          <  1:542276/76‑1 (MQ=40)                                                                                               tttGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGAATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTa                                               >  1:905391/1‑149 (MQ=255)                                                                                                     tCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGtt                                         <  1:60081/149‑1 (MQ=255)                                                                                                     tCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGtt                                         >  2:452222/1‑149 (MQ=255)                                                                                                       aCTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTcg                                       >  2:28092/1‑149 (MQ=255)                                                                                                        cTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTAACTGGGTTATCAGTTcgc                                      >  1:462744/1‑149 (MQ=255)                                                                                                          gttgggcGGTTAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCgg                                    <  1:190284/143‑1 (MQ=255)                                                                                                          gTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCgg                                    <  1:527695/149‑1 (MQ=255)                                                                                                            aacgcGGATAAGATGAGCATGCATTGCATCAGACATTATTGCGGCACCGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGt                                  <  1:207409/145‑1 (MQ=21)                                                                                                            aGGTCGGATAAGATGCGGAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGt                                  <  1:527545/149‑1 (MQ=255)                                                                                                                    tAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGa                          <  2:289970/149‑1 (MQ=255)                                                                                                                        aTGCGCAAGCATCGCATCCGACATTATTGCGGCACTg                                                                                                                                      <  1:526340/37‑1 (MQ=255)                                                                                                                            gcAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt                  <  1:225018/149‑1 (MQ=255)                                                                                                                            gcAAGCATCGCATCTGACATTATCGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTCATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCgt                  <  1:773863/149‑1 (MQ=255)                                                                                                                                  ctcgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTcc            <  1:138425/148‑1 (MQ=255)                                                                                                                                    cgcatcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAg          >  1:709782/1‑149 (MQ=255)                                                                                                                                      catcCGACTTTATTGGGGCACTGGAGTTGGGCAACAGGGCCGGATGCGGCGCGAGCGTCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGat        <  2:470375/149‑1 (MQ=37)                                                                                                                                        tcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTGCGTTTTAATGCCAGCAAAAACGGTGAATTACCTGGGTTATCAGTTCACGGGTGGGCTTGATAAACGGTCGTTCCAGatat      >  2:640697/1‑149 (MQ=25)                                                                                                                                        tcCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCTCGGGTGGGCTTGATAAACCATGTTTCCAGatat      >  1:3372/1‑149 (MQ=255)                                                                                                                                           gACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtca   >  2:556329/1‑149 (MQ=255)                                                                                                                                            aCATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAAtt                                                         >  2:536380/1‑94 (MQ=255)                                                                                                                                            aCATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAAtt                                                         <  1:536380/94‑1 (MQ=255)                                                                                                                                            aCATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtcat  >  1:802882/1‑149 (MQ=255)                                                                                                                                            aCATTAGTGCGGCACTGTAGGTTGGCCACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATtcat  <  1:889426/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                    GCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGTTGGGCATCGTTTGAGTCACTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGTTTTAATGCCAGCAAAAATGGTGAATTACCTGGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCAT  >  NC_000913/4153488‑4153775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.