New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 39460535 (0.100)7 (0.150) 5/282 6.4 59.0% noncoding (2350/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
?NC_000913_3_pae_tpiA = 3946069 NA (NA)noncoding (2366/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
Rejected: Coverage evenness skew score above cutoff.

CCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGT  >  NC_000913_3_pae_tpiA/3945910‑3946059
                                                                                                                                               |      
ccGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCGGGTTGACTGCGAGCg   >  1:749683/1‑149 (MQ=17)
ccGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGCCGGACATCAGGTGGTTAGTGCAATGGCATAAGCCAGCTTGACTTCGAggg   >  2:48221/1‑147 (MQ=255)
ccGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGAGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGATTGGATAATCCTGGTAGGACATCCGGGAGCTACAGCAATGGCGTAAGACAGCACGACTGCGAACg   >  2:407530/1‑149 (MQ=11)
 ctcgATCCGGGTGGCGGAAAGTGTCTGGGGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTTGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGt  <  2:238159/146‑1 (MQ=11)
 cGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGt  >  1:13600/1‑149 (MQ=32)
                                                                                                                                               |      
CCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGT  >  NC_000913_3_pae_tpiA/3945910‑3946059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.