New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3105531	49 (1.010)	4 (0.090)	4/274	6.8	8.0%	intergenic (+19/‑183)	mltC/nupG	membrane‑bound lytic murein transglycosylase C/nucleoside transporter
	?	NC_000913_3_pae_tpiA	= 3105537	46 (1.000)					intergenic (+25/‑177)	mltC/nupG	membrane‑bound lytic murein transglycosylase C/nucleoside transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCAAAC  >  NC_000913_3_pae_tpiA/3105391‑3105681                                                                                                                                                   |                                                                                                                                                 ttattaACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTc                                                                                                                                                >  1:693241/1‑149 (MQ=255)    ttaACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAgg                                                                                                                                             >  1:202222/1‑149 (MQ=255)    ttaACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAgg                                                                                                                                             <  1:468997/149‑1 (MQ=255)             tGACCCCGGGCGATTTTTCTCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAAt                                                                                                                                    <  1:300420/149‑1 (MQ=255)                        caTGCTTATCAGAAGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTAAAGACCGCTCAAACATCCTACCGCCGCCGATAATTCCATTAACCGCCCCGGACGATGCTCAGGGGCAAACATGTTATCcacct                                                                                                                         <  2:457135/148‑3 (MQ=255)                              tATCAGACGCTGACGACCCGCCATCCTTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATCCCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACAGCCCCTGACGATGCTCATTGGCAAAAATGTTTTGCACATccaaat                                                                                                                   >  2:16416/1‑144 (MQ=255)                                tCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCATAAATCCTACCGCCGCCGATAATTCCATTAACCGCACCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAAttt                                                                                                                 >  1:644490/1‑149 (MQ=255)                                  aGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCg                                                                                                               >  2:236574/1‑149 (MQ=255)                                   gACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATCCCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCTCCCCTGACGATGCTCAGCGCCAAAAATGTTATCAACATCACAATTTcct                                                                                                              >  2:196923/1‑147 (MQ=255)                                     cGCTGACGAACCGCCATCCCCTTGCGTAATCTCGCCGTTATCTTTATAAAGCGAATACCTCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGTCGATGCTCAGGCGTAAAAAGGTTATCCACATCACAATTTCGttt                                                                                                            <  2:337870/149‑1 (MQ=255)                                      gCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGtttt                                                                                                           <  1:592588/149‑1 (MQ=255)                                        tGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGc                                                                                                         >  1:269449/1‑149 (MQ=255)                                            gacCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAAt                                                                                                     >  1:816334/1‑149 (MQ=255)                                              cccGCCATCCCTCGGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCGGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTg                                                                                                   <  1:545941/149‑1 (MQ=255)                                               cccccATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTgg                                                                                                  <  2:676433/146‑1 (MQ=255)                                                     tCCGTCTGCTGAATCTCGCAGTTATCTTTATAAAGTGAATACCGCCAAAAAATCCTACCGCCGCCGATAATTCCATTACCCGCCTCTGACTATTCTCTGGGGCAAAAATGTTATCCTCATCACAATTTCGTTTTGCAAATTGGGAATGt                                                                                            <  2:266293/149‑1 (MQ=255)                                                         tctGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCCCAATTTCGTTTTGCACATTGGGAATGTTTGc                                                                                        >  2:521851/1‑149 (MQ=255)                                                         tctGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGc                                                                                        <  1:236574/149‑1 (MQ=255)                                                         tctGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGACGATAATTCCATTAACCGCCCCTGACGATGCTCAGGAGGAAAAATGTTATCCACATCCCAACTTCGGTTTGAAAATGGGCAATGTTTGc                                                                                        >  2:817018/1‑149 (MQ=255)                                                                  tctcGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTg                                                                               >  1:285717/1‑149 (MQ=255)                                                                   ctcGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGc                                                                              <  1:401450/149‑1 (MQ=255)                                                                   ctcGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGc                                                                              <  1:617364/149‑1 (MQ=255)                                                                    tcGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGcc                                                                             <  1:134653/149‑1 (MQ=255)                                                                      gCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCcac                                                                           >  1:225583/1‑149 (MQ=255)                                                                                  ataAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACaaaaa                                                               >  2:103537/1‑149 (MQ=255)                                                                                     aaGTGAGTAATGCGCAAAAATCCTACCGGCGCCGATAATTCCATGAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAAATTCGTTTTGCAAATTGGTAATGTTTGCAATTATGTGCGACAGGTAACAATAAAca                                                            >  2:492442/1‑148 (MQ=255)                                                                                     aaGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAACTTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAAcc                                                            >  2:471504/1‑149 (MQ=255)                                                                                      aGTGAATATCGATCAAAGATCCTACCGCCGCCTATAATTCCATTAAACGCCCCTCACGATGCTCAGGGGCAAAAACGTTATCCACATCACAATTTCTTTTTGCAAACTGGGAATGTTTGCAACTATTTGCCACAGGTAACAAAAAACCa                                                           <  2:623802/149‑1 (MQ=255)                                                                                      aGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAGGATGTTATCCACATCACAATTTAGTTTTGCAAATTGGGAATGTTTGCAGTTATTTGTCACAGGTTACGAACAACCa                                                           >  1:543501/1‑149 (MQ=255)                                                                                      aGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCa                                                           <  1:736614/149‑1 (MQ=255)                                                                                          aaTACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTCCAACAGGTAACAAAAAACCAGTcc                                                       >  2:733092/1‑149 (MQ=255)                                                                                                      aaaTCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATa                                           <  1:103537/149‑1 (MQ=255)                                                                                                         tCCTACCGCCGCCGATAATTCCATTAACCGCCCCGGACGATGCTCAGGGGGAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGTGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGaa                                        <  1:34377/149‑1 (MQ=255)                                                                                                            tACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATcc                                     >  1:764639/1‑149 (MQ=255)                                                                                                            tACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGCCAAAAATGTTATCCACATCTGAATTTCGTTTTGCAAAGTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAACCCAGTACTCGAAGTTGATAGAATcc                                     >  1:768055/1‑149 (MQ=255)                                                                                                                gccgcccATAATTCCATTAACCGCCCCTGTCGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCcatc                                 <  1:65213/149‑1 (MQ=255)                                                                                                                        gaagcgcATTAATCGCGCCTGACGATACAACGGGGCAAACATGTTATCCATATCACAATGTCGTTTTGCAAAGGGGGAATGATTACAATTATTTTCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCAGCATCTCGCa                         <  2:323463/143‑1 (MQ=255)                                                                                                                            tCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGt                     <  1:397248/149‑1 (MQ=255)                                                                                                                              cATTAACCGCCCCTGACGATGCTCACGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCTCGGTCa                   >  1:771793/1‑149 (MQ=255)                                                                                                                                    ccGCCCCTTACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGCCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAAtgtg             <  1:741611/149‑1 (MQ=255)                                                                                                                                    ccGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAAAACAAAAGCAGGACGCGAATTTGATAGAATCCCATCATCTCGCTCGGTCAAAtgtg             >  1:237491/1‑149 (MQ=255)                                                                                                                                       acccAGACCATGCCCAGGAACAAAAATGCTAGCCACAACACAATTACGTTTGGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCtt          <  1:229883/148‑1 (MQ=255)                                                                                                                                         ccTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCtttt        >  1:738476/1‑149 (MQ=255)                                                                                                                                          ccgACGATGTTTAGGGGCAAAGATGTTATCCACAGCACATTTAGGTTTTGCAAATTGGGAATGTTTGCAATTAGGTGCCACAGGTAACAAAAATCCTGTCCGCGAAGTTGATAGATTCCCATCATCTCGCACGGTCAAATGTGCttgtt       <  2:355895/147‑1 (MQ=255)                                                                                                                                           tGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTc      <  1:174753/149‑1 (MQ=255)                                                                                                                                           tGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTc      >  2:6967/1‑149 (MQ=255)                                                                                                                                             aCGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCaa    >  2:233756/1‑149 (MQ=255)                                                                                                                                               gATGCTCGGGGGTAAAAATGTTTTCCAAAACACACTTTCGGTTTGCAAATTGGCAATGTTTGCAATTATTTGCCCCAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCAAac  <  2:339915/149‑1 (MQ=255)                                                                                                                                               gATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTGTGCAAATTGGGAATGTTTGCAATTATCTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCAAac  <  1:48178/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 TTATTAACACCATGACGCCGGGCGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAATACCGCGCAAAAATCCTACCGCCGCCGATAATTCCATTAACCGCCCCTGACGATGCTCAGGGGCAAAAATGTTATCCACATCACAATTTCGTTTTGCAAATTGGGAATGTTTGCAATTATTTGCCACAGGTAACAAAAAACCAGTCCGCGAAGTTGATAGAATCCCATCATCTCGCACGGTCAAATGTGCTTTTTCAAAC  >  NC_000913_3_pae_tpiA/3105391‑3105681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.