Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_pae_tpiA 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_pae_tpiA 257908–258674 258683 10–776 52 [0] [0] 52 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 2579070 (0.000)49 (1.070) 37/274 0.3 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913_3_pae_tpiA 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

GCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913_3_pae_tpiA/257761‑258055
                                                                                                                                                  |                                                                                                                                                    
gCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAag                                                                                                                                                    >  1:197932‑M1/1‑147 (MQ=255)
 cTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATCTACCGCACTAGGCCCGTATATTCGTGAAGGTAagg                                                                                                                                                   >  1:7054‑M1/1‑146 (MQ=255)
              tttGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcacagataatcg                                                                                                                                      >  2:510590‑M1/1‑133 (MQ=255)
                tGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                                    <  2:1820‑M1/149‑19 (MQ=255)
                 gCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt                                                                                                                                   <  2:197932‑M1/149‑20 (MQ=255)
                   tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct                                                                                                                                 >  1:849139‑M1/1‑128 (MQ=255)
                       ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCACGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                             <  1:202567‑M1/149‑26 (MQ=255)
                                   ggTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc                                                                                                                 <  1:3553‑M1/149‑38 (MQ=255)
                                           aGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                                                                                                         >  2:439343‑M1/1‑104 (MQ=255)
                                                  tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtccacgt                                                                                                  >  2:151516‑M1/1‑97 (MQ=255)
                                                  tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGAAagtgcacagataatcgattctttttcgattgtctggctgtatgcgtccacgt                                                                                                  >  1:585823‑M1/1‑97 (MQ=255)
                                                  gctcaacaggaGATCGCAGTGATGTTACCGAGTGGACCTCCGAAGAGCAGATTGATCAAAAATTTTACCGCAGTAGGCCCGTATATTCGTGAAGGTAagtgaaaagataatcgattcgttttcgattgtctggctgtatgcgtcaacgt                                                                                                  <  1:90539‑M1/146‑53 (MQ=255)
                                                      aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCTTGAAGGTAagtgcaaagataatcgattctttttcgattttctggctgtatgcgtcaacgtagaa                                                                                              >  2:196910‑M1/1‑93 (MQ=255)
                                                        caGGAGATAGCAATGACGGTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                            <  1:730136‑M1/149‑59 (MQ=255)
                                                             gaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCATGAAGGGAtgtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac                                                                                       <  2:562526‑M1/149‑64 (MQ=255)
                                                                  gaatGCCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTCCTGTACTAGGCCCGTATTTTCGTGATGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                                  <  2:464314‑M1/148‑69 (MQ=255)
                                                                  cAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                                  <  2:798458‑M1/149‑69 (MQ=255)
                                                                      gACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATATACCGCACTAGCCCCGGATCTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggttgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                              <  2:426343‑M1/149‑73 (MQ=255)
                                                                        cGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgactgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                            <  1:850703‑M1/149‑75 (MQ=255)
                                                                        cGTTACCGAGTGGACAACCGAAGAGCACATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAggtgcaaagataatcgatgctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                            <  1:345852‑M1/149‑75 (MQ=255)
                                                                        cGTAACCGAGTGTCCACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                            <  1:653022‑M1/149‑75 (MQ=255)
                                                                          ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatacgtcaacgtgaaacaggcaccggacgtgcgtga                                                                          >  2:789396‑M1/1‑73 (MQ=255)
                                                                              cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacatgaaaccggcaccggaagtgcgtgaattc                                                                      >  1:840297‑M1/1‑69 (MQ=255)
                                                                                aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtatacgggaaaccggcaccggaagtgcgtgaattctg                                                                    <  1:843271‑M1/149‑83 (MQ=255)
                                                                                    gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggc                                                                <  2:107502‑M1/149‑87 (MQ=255)
                                                                                    gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                            >  1:848869‑M1/1‑63 (MQ=255)
                                                                                    gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                            <  2:848869‑M1/137‑75 (MQ=255)
                                                                                    gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacattaaacctgcaccggaagtgcgtgaattctggggc                                                                >  1:370302‑M1/1‑63 (MQ=255)
                                                                                         ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCTCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcggttgtctgggtgcatgcgttaacgtgaaaccggcaccggaagtgagtgaattctggggatggtg                                                           >  2:643186‑M1/1‑58 (MQ=255)
                                                                                         ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                           >  1:497805‑M1/1‑58 (MQ=255)
                                                                                         ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                           >  1:466274‑M1/1‑58 (MQ=255)
                                                                                          cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttttgatttttttgctgtatgcgtcaacgtgaaaccggcaccggaagtacgtgaattctggggctggtgg                                                          >  2:646489‑M1/1‑57 (MQ=255)
                                                                                                     ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgtgaattctggggctggtggatggagcggga                                               >  1:108496‑M1/1‑46 (MQ=255)
                                                                                                         tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcg                                           >  1:332549‑M1/1‑42 (MQ=255)
                                                                                                         tCAAAAAATTTACCGCACTAGGCCCGAACATTCGACAGCGTAagtgcaaatataatcaattctttttcgattgtctggccgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggaggggggtggaagcg                                           >  2:832719‑M1/1‑42 (MQ=255)
                                                                                                          cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgc                                          <  1:439343‑M1/149‑109 (MQ=255)
                                                                                                            aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaatccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcag                                        <  2:849094‑M1/149‑111 (MQ=255)
                                                                                                                aTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattatctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaat                                    >  1:308963‑M1/1‑35 (MQ=255)
                                                                                                                    aCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatcatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattcttgcgctggtggatggagctggaagcgcaggaatcccg                                <  2:167842‑M1/149‑119 (MQ=255)
                                                                                                                    aCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccg                                >  2:647924‑M1/1‑31 (MQ=255)
                                                                                                                     ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                               <  1:647924‑M1/149‑120 (MQ=255)
                                                                                                                      cgaactaGGCCCGTATAGTGGGGAAGGCAagtggaaagatattcggttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                              <  2:337923‑M1/146‑121 (MQ=255)
                                                                                                                          cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                          <  2:497805‑M1/149‑125 (MQ=255)
                                                                                                                          cTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgattctttgtcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                          <  2:714561‑M1/149‑125 (MQ=255)
                                                                                                                             gggccgtaTATTCGTGAAGGTTagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                       <  2:496324‑M1/146‑128 (MQ=255)
                                                                                                                             ggctggtatatCTGTGAGGGTAggtgcaaatataatcgattctttttcgattgtcgggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                       <  2:134099‑M1/144‑128 (MQ=255)
                                                                                                                                ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggctggagctggaggcgcaggaatcctgttttgcctacag                    >  2:295733‑M1/1‑19 (MQ=255)
                                                                                                                                ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggatgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagagcaggaatcccgttttacgtacag                    >  1:713896‑M1/1‑19 (MQ=255)
                                                                                                                                 cGTATATGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagt                   <  1:404053‑M1/149‑132 (MQ=255)
                                                                                                                                               ggTAtgtgggaaggttatcgcttttttttcgattgtctggctgtgtgcgtcaacgtgaatccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggggtcccgttttacctacagttaccagtttggtct     <  2:7054‑M1/149‑146 (MQ=255)
                                                                                                                                                  aagtggaaagagtatcgatgcttgttcgattgtcgggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgtt  <  2:546540‑M1/149‑149 (MQ=255)
                                                                                                                                                  aagggcaaagataagtgattctttttcgattgtcttgctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgtt  <  2:138247‑M1/149‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
GCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913_3_pae_tpiA/257761‑258055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: