New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1469240	NA (NA)	94 (1.010)	68/250	0.4	80.3%	intergenic (‑91/‑1)	insC1/ydbA	IS2 repressor TnpA/pseudogene, autotransporter homolog; interrupted by IS2 and IS30
	?	NC_000913_3_pae_tpiA	1755828 =	23 (0.250)					coding (131/1413 nt)	pykF	pyruvate kinase I

CGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/1469092‑1469240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCTGGTCAGACCTTTAC  >  NC_000913_3_pae_tpiA/1755828‑1755972                                                                                                                                                                                                                                                                                                        CGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCTGGGGGCCAGTCTAG                                                                                                                                                  >  2:323318/1‑150  GATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGT                                                                                                                                                 >  3:127930/1‑150  GATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGT                                                                                                                                                 <  2:981694/150‑1   ATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTC                                                                                                                                                <  4:116197/150‑1      TTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGC                                                                                                                                             <  3:13453/150‑1      TTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGC                                                                                                                                             >  2:111550/1‑150        TTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGC                                                                                                                                           <  4:407367/150‑1           CTGTGTGGTACGCAGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCGCCAATGACTAGTCTAAAAAATAGAATTAAGACTATCACTTATATAAGAGATATTGGTTGTATGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATT                                                                                                                                        >  3:174258/1‑150            TGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTC                                                                                                                                       >  2:20977/1‑150                TGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAA                                                                                                                                   >  2:455746/1‑150                  GTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGCATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATC                                                                                                                                 >  1:241616/1‑150                     CGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGC                                                                                                                              <  3:610814/150‑1                       CCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGC                                                                                                                            <  2:124032/150‑1                          TCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAAC                                                                                                                         <  1:111550/150‑1                             GCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTG                                                                                                                      <  1:598089/150‑1                              CGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGA                                                                                                                     <  1:721219/150‑1                                    TCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCA                                                                                                               >  3:693141/1‑150                                        GCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAAC                                                                                                           >  3:74288/1‑150                                        GCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAAC                                                                                                           >  2:78928/1‑150                                          CCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTG                                                                                                         <  2:1053282/150‑1                                           CTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGG                                                                                                        >  1:654581/1‑150                                            TAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGT                                                                                                       <  4:199514/150‑1                                            TAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTAATGAGCAAAACTGGT                                                                                                       <  2:752434/150‑1                                                  ATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACC                                                                                                 >  1:276502/1‑150                                                     AATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGT                                                                                                       >  1:39026/1‑141                                                     AATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGT                                                                                                       <  2:39026/141‑1                                                      ATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCG                                                                                             >  1:392179/1‑150                                                                 TCCAATGACTAGTCTAAAAACTAGCATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTT                                                                                  <  2:241616/150‑1                                                                       GACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCC                                                                                              <  1:626493/132‑1                                                                       GACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCC                                                                                              >  2:626493/1‑132                                                                          TAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCTTTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAA                                                                         <  4:693141/150‑1                                                                          TAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAA                                                                         <  1:455746/150‑1                                                                          TAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGAT                                                                                                                    <  2:1093470/107‑1                                                                          TAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGAT                                                                                                                    >  1:1093470/1‑107                                                                          TAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCCAGCGCATTCAGAAGCTGCGCAACGTGATGGGCCAAACTGGTAAAGTCATTGCTATCCTGCTTGATACCAAg                                                                         <  2:532257/150‑2                                                                             TCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTC                                                                                                                                       <  1:863543/85‑1                                                                             TCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGAGCATTC                                                                                                                                       >  2:863543/1‑85                                                                                AAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATC                                                                                        <  3:347456/129‑1                                                                                AAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATC                                                                                        >  4:347456/1‑129                                                                                 AAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGG                                                                  >  4:188368/1‑150                                                                                 AAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGA                                                                                                                     >  2:384901/1‑99                                                                                 AAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGA                                                                                                                     <  1:384901/99‑1                                                                                   AACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTC                                                                                                                                       >  1:1002270/1‑79                                                                                   AACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTC                                                                                                                                       <  2:1002270/79‑1                                                                                     CTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAAT                                                              <  2:654581/150‑1                                                                                           TTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCC                                                                                              <  4:62650/112‑1                                                                                           TTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCC                                                                                              >  3:62650/1‑112                                                                                                  TATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAA                                                 >  3:131379/1‑150                                                                                                  TATCACTTAAATAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGC                                                                                                                              >  2:322209/1‑73                                                                                                  TATCACTTAAATAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGC                                                                                                                              <  1:322209/73‑1                                                                                                      ACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGG                                             <  1:768150/150‑1                                                                                                       CTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGA                                            >  3:407377/1‑150                                                                                                        TTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCCAATTCTTCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAA                                           <  1:20977/150‑1                                                                                                        TTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAA                                           <  1:66300/150‑1                                                                                                          ATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCG                                                                                             <  3:136527/98‑1                                                                                                          ATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCG                                                                                             >  4:136527/1‑98                                                                                                            TTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGTAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGTAAGGCG                                       <  2:1238/150‑1                                                                                                            TTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCG                                       >  3:141350/1‑150                                                                                                             TAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGG                                      <  2:276502/150‑1                                                                                                               AGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTA                                    >  4:260719/1‑150                                                                                                                GTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCG                                                                                             >  2:780528/1‑92                                                                                                                GTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCG                                                                                             <  1:780528/92‑1                                                                                                                 TGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAAC                                  >  2:882507/1‑150                                                                                                                 TGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAAC                                  >  3:4476/1‑150                                                                                                                 TGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGAT                                                                               <  1:722718/105‑1                                                                                                                 TGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATGCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGAT                                                                               >  2:722718/1‑105                                                                                                                      TTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGT                             >  4:36066/1‑150                                                                                                                      TTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGA                                                                                                                  <  1:260307/65‑1                                                                                                                      TTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGA                                                                                                                  >  2:260307/1‑65                                                                                                                         GTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGG                                                                                                        >  1:327614/1‑72                                                                                                                         GTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGG                                                                                                        <  2:327614/72‑1                                                                                                                          TTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCT                         >  1:276734/1‑150                                                                                                                          TTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCT                         <  2:276734/150‑1                                                                                                                          TTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTA                                                                                                      >  1:817611/1‑73                                                                                                                          TTGTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTA                                                                                                      <  2:817611/73‑1                                                                                                                            GTCTGGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCT                       <  4:407377/150‑1                                                                                                                                GGAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAA                   <  4:4476/150‑1                                                                                                                                 GAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGAT                                                                               <  3:524775/89‑1                                                                                                                                 GAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGAT                                                                               >  4:524775/1‑89                                                                                                                                 GAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGC                                                                                    >  2:437598/1‑84                                                                                                                                 GAGATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGC                                                                                    <  1:437598/84‑1                                                                                                                                   GATTCAGGGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCT                <  3:260719/150‑1                                                                                                                                          GGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCTGGTCAGA         >  1:642526/1‑150                                                                                                                                          GGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCTGGTCAGA         >  1:457395/1‑150                                                                                                                                          GGGGCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCTGGTCAGA         >  1:1094955/1‑150                                                                                                                                             GCCAGTCTAGTCAGTGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCTG               <  2:138440/141‑1                                                                                                                                             GCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCTGGTCAGACCT      <  4:74288/150‑1                                                                                                                                             GCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGAT                                                                                                                    <  1:710011/40‑1                                                                                                                                             GCCAGTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGAT                                                                                                                    >  2:710011/1‑40                                                                                                                                             GCCAGTCTAGCCAGTGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCTG               >  1:138440/1‑141                                                                                                                                                 GTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCTGGTCAGACCTTTAC  <  4:295944/150‑1                                                                                                                                                 GTCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCTGGTCAGACCTTTAC  >  3:295944/1‑150                                                                                                                                                  TCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATG                                                                                                                   <  1:282287/36‑1                                                                                                                                                  TCTAGTCAGCGCATTCAGAATCTGCGCAACGTGATG                                                                                                                   >  2:282287/1‑36                                                                                                                                                                                                                                                                                                        CGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/1469092‑1469240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTTCTCTGAAAGCTGGTCAGACCTTTAC  >  NC_000913_3_pae_tpiA/1755828‑1755972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.