New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 3427055NA (NA)22 (0.240) 21/250 6.0 NA intergenic (‑22/+21) alaU/ileU tRNA‑Ala/tRNA‑Ile
?NC_000913_3_pae_tpiA = 3427078 NA (NA)noncoding (75/77 nt) ileU tRNA‑Ile
Rejected: Coverage evenness skew score above cutoff.

AGTATTTTTTATTTAATCACTACAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGGT  >  NC_000913_3_pae_tpiA/3426930‑3427079
                                                                                                                             |                        
aGTATTTTTTATTTAATCACTACAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCATGGCAAATTTgaa  <  1:676529/150‑3 (MQ=0)
                                                                                                                             |                        
AGTATTTTTTATTTAATCACTACAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGGT  >  NC_000913_3_pae_tpiA/3426930‑3427079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.